PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN544393.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 329aa    MW: 36049.7 Da    PI: 10.355
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN544393.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57334.65.2e-11118210297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf.kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                        +f+r ws  De+++L  + + ++ +g  +  d+++++  + +s++  ++    l +K+ +LK+ + + +     ++ p+ + ++ +  f+l+
  KN544393.1_FGP001 118 AFERSWSRADELAILETMANHANAHG-GALPDTSDLFAALASSLERgDADLPKLADKVHKLKRWYDNARLP---QRCPTDDDDDTRRLFQLC 205
                        699*********************99.8899****9999999998548999****************9988...6777778888899***** PP

             DUF573  93 kkiWg 97 
                         k+Wg
  KN544393.1_FGP001 206 GKVWG 210
                        ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-16119210IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSSWRSWRSL FSSLANANGG GSNADASSGS GTSSPLVHEA QQAAARRRSA RTKKPPEEEA  60
AGSQPQPKTR PSPASKASKA SKAKALLQLG DGEAKKKPAP TPTPTQKRSN KRKRVAPAFE  120
RSWSRADELA ILETMANHAN AHGGALPDTS DLFAALASSL ERGDADLPKL ADKVHKLKRW  180
YDNARLPQRC PTDDDDDTRR LFQLCGKVWG PPSTVLRTSP RQRHKVVGVL VQGNGANPQQ  240
AAAPKVKEKR ARRELSELYV LYPCLAQEVK AHANEYGELI GTAFQFIGDD EARCYDDRYR  300
KMLVDKLNMK KEHADLTKSL LCTLAGYIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194113KKKPAPTPTPTQKRSNKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN544393.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060580.0AP006058.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0066B16.
GenBankAP0060610.0AP006061.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0414D03.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611454.10.0uncharacterized protein LOC9269165
TrEMBLA0A0E0IG000.0A0A0E0IG00_ORYNI; Uncharacterized protein
STRINGONIVA09G00100.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162861010