PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN544304.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 291aa    MW: 33179.7 Da    PI: 8.768
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN544304.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.58e-10337842
                       HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42
                       rr+++NReAAr+sR+RKka+i++Le+   +L +  
  KN544304.1_FGP001  3 RRLAQNREAARKSRLRKKAYIQQLETSRLKLAQLE 37
                       9************************8544443333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502178.703142IPR004827Basic-leucine zipper domain
SMARTSM003381.0E-4160IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.71E-7345No hitNo description
PfamPF001704.4E-8338IPR004827Basic-leucine zipper domain
PROSITE patternPS000360318IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.9E-8350No hitNo description
PfamPF141441.8E-2688164IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
VLRRLAQNRE AARKSRLRKK AYIQQLETSR LKLAQLEQEL QRARQQAVYA NGSLREPNLG  60
FTGPIDPGAL GFEIKYSHWV DEQNRNTGEL RNALLQGQTS DQDLELKLLV EAGLDNYNRL  120
FEMKEEAANS DVFYIMSGMW KTPTERFFLW IGGFRPSEVL KNLRPQLEPL TDKQVVEVGG  180
LQQTSMQVED ALSQGMDKLK QTIADSLTAA DPFDSPEAYM VHMANAVEQL RSLVQFVTQA  240
DHLRQQTLQE MHRILTTRQA ARGLLALGDY FQRFRALSSL WAARPRDSGI S
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN544304.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0737150.0AK073715.1 Oryza sativa Japonica Group cDNA clone:J033059P06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636710.10.0transcription factor TGAL6 isoform X1
RefseqXP_015636711.10.0transcription factor TGAL6 isoform X1
RefseqXP_015636712.10.0transcription factor TGAL6 isoform X1
RefseqXP_015636713.10.0transcription factor TGAL6 isoform X2
RefseqXP_015636714.10.0transcription factor TGAL6 isoform X2
RefseqXP_015636715.10.0transcription factor TGAL6 isoform X2
RefseqXP_025880677.10.0transcription factor TGAL6 isoform X1
RefseqXP_025880678.10.0transcription factor TGAL6 isoform X3
SwissprotA0A0P0WFC80.0TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBLA0A0D3G0460.0A0A0D3G046_9ORYZ; Uncharacterized protein
TrEMBLA0A0D3G0490.0A0A0D3G049_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZRD40.0A0A0D9ZRD4_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZRD80.0A0A0D9ZRD8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GKM90.0A0A0E0GKM9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PEM00.0A0A0E0PEM0_ORYRU; Uncharacterized protein
TrEMBLA0A0E0PEM40.0A0A0E0PEM4_ORYRU; Uncharacterized protein
TrEMBLI1PPQ20.0I1PPQ2_ORYGL; Uncharacterized protein
STRINGOGLUM04G26680.10.0(Oryza glumipatula)
STRINGOS04T0637000-010.0(Oryza sativa)
STRINGONIVA03G13630.10.0(Oryza nivara)
STRINGORGLA04G0217100.10.0(Oryza glaberrima)
STRINGOBART04G25140.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-111TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Okada A, et al.
    OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice.
    J. Biol. Chem., 2009. 284(39): p. 26510-8
    [PMID:19635799]
  3. Okada K
    The biosynthesis of isoprenoids and the mechanisms regulating it in plants.
    Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25
    [PMID:21737944]
  4. Yamane H
    Biosynthesis of phytoalexins and regulatory mechanisms of it in rice.
    Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8
    [PMID:23748776]
  5. Miyamoto K, et al.
    Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells.
    PLoS ONE, 2014. 9(8): p. e105823
    [PMID:25157897]
  6. Miyamoto K, et al.
    Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    J. Plant Physiol., 2015. 173: p. 19-27
    [PMID:25462074]