PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN543736.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 70aa MW: 7683.57 Da PI: 5.3595 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 73.4 | 4.4e-23 | 12 | 70 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y++++d+ ++ +sws+++nsfvv+d++ fa +Lp +Fkh nf+SF+RQLn+Y KN543736.1_FGP001 12 FLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFAAGLLPLHFKHANFSSFLRQLNTY 70 9*********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-24 | 6 | 70 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.2E-14 | 8 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.26E-20 | 10 | 70 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.9E-14 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.0E-19 | 12 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-14 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-14 | 63 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 70 aa Download sequence Send to blast |
MEGLHDAGPP PFLTKTYDMV DDAGTDAAVS WSATSNSFVV WDPHAFAAGL LPLHFKHANF 60 SSFLRQLNTY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1hks_A | 3e-16 | 7 | 70 | 2 | 65 | HEAT-SHOCK TRANSCRIPTION FACTOR |
1hkt_A | 3e-16 | 7 | 70 | 2 | 65 | HEAT-SHOCK TRANSCRIPTION FACTOR |
2ldu_A | 3e-16 | 7 | 70 | 12 | 78 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN543736.1_FGP001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK101824 | 2e-77 | AK101824.1 Oryza sativa Japonica Group cDNA clone:J033067M16, full insert sequence. | |||
GenBank | AM409186 | 2e-77 | AM409186.1 Oryza sativa Indica Group mRNA for heat shock factor A2b (hsfA2b gene). | |||
GenBank | AP003826 | 2e-77 | AP003826.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1361_E02. | |||
GenBank | AP014963 | 2e-77 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY323488 | 2e-77 | AY323488.1 Oryza sativa (japonica cultivar-group) heat stress protein (HS1) mRNA, complete cds. | |||
GenBank | AY344487 | 2e-77 | AY344487.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF5 mRNA, complete cds. | |||
GenBank | CP012615 | 2e-77 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645272.1 | 4e-39 | heat stress transcription factor A-2b | ||||
Swissprot | Q6VBB2 | 3e-40 | HFA2B_ORYSJ; Heat stress transcription factor A-2b | ||||
TrEMBL | A0A0E0AGG4 | 7e-39 | A0A0E0AGG4_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM07G04480.1 | 1e-39 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G22830.1 | 7e-35 | heat shock transcription factor A6B |
Publications ? help Back to Top | |||
---|---|---|---|
|