PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN543721.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 211aa MW: 23373 Da PI: 6.6478 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 37.9 | 3.5e-12 | 44 | 94 | 13 | 59 |
E--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 13 KevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 K+ k+ e p YYrCt++ +Cp++k+v+++ ++dp ++ +tY ++H+++ KN543721.1_FGP001 44 KKEKEMEIPLFYYRCTYKndmKCPATKQVQQKdTNDPPMFSVTYFNHHTCN 94 7779999**********99999*******8761679*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.0E-11 | 44 | 95 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-11 | 44 | 95 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-13 | 44 | 93 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.8E-11 | 44 | 95 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
PLGSPTYLVC SQELANSCGC FFLQKSTIIP HCHERQLEGD PKRKKEKEME IPLFYYRCTY 60 KNDMKCPATK QVQQKDTNDP PMFSVTYFNH HTCNSSKIVG STPDTAAQSS SRRAISICFN 120 SHGTTSEQPT FLSSSASLLS PSMQSYSSNQ QPDMNTYSRQ FQWADTSSST SNAPVKMEAD 180 DYAEASASPS TTGALSRTLL PIDSSQIFVL E |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN543721.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123514 | 0.0 | AC123514.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence. | |||
GenBank | AK073243 | 0.0 | AK073243.1 Oryza sativa Japonica Group cDNA clone:J033005D11, full insert sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. | |||
GenBank | CT832018 | 0.0 | CT832018.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105A09, full insert sequence. | |||
GenBank | CU405875 | 0.0 | CU405875.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C005J02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616443.1 | 3e-88 | probable WRKY transcription factor 70 isoform X2 | ||||
TrEMBL | A0A0E0F1X1 | 2e-90 | A0A0E0F1X1_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI11G01510.1 | 7e-93 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2032 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 1e-09 | WRKY family protein |