PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN543297.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 292aa    MW: 32193.2 Da    PI: 5.9759
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN543297.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.1e-105089544
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
                       k  rr+++NReAAr+sR+RKka++++Le    +L +  ++
  KN543297.1_FGP002 50 KTMRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 89
                       7789************************855444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-646109IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.454892IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.81E-75093No hitNo description
CDDcd147083.12E-2150102No hitNo description
PfamPF001703.3E-75091IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.6E-85195No hitNo description
PROSITE patternPS0003605368IPR004827Basic-leucine zipper domain
PfamPF141448.2E-34132207IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MADASSRTDT SIVVDNDDKN HQLENGQSGA VMASNSSDRS DRSDKLMDQK TMRRLAQNRE  60
AARKSRLRKK AYVQQLESSK LKLAQLEQEL QKARQQGIFI SSSGDQTHAM SGNGALTFDL  120
EYTRWLEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEVFKVKGVA AKADVFHILS  180
GMWKTPAERC FLWLGGFRPS ELLKLLANHL EPLTEQQLLG LNNLQESSQQ AEDALSQGME  240
ALQQSLADTL AGSLGSSGSS GNVANYMGQM AMAMGKLGTL ENFLCQASIF TF
Functional Description ? help Back to Top
Source Description
UniProtPlays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269|PubMed:16045470, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:27176732}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN543297.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0512950.0AB051295.1 Oryza sativa OsNIF2 mRNA for bZIP transcription factor, complete cds.
GenBankAK1004400.0AK100440.1 Oryza sativa Japonica Group cDNA clone:J023089F16, full insert sequence.
GenBankCT8311860.0CT831186.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117D18, full insert sequence.
GenBankHQ8588070.0HQ858807.1 Oryza sativa Japonica Group isolate UT1185 bZIP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647505.10.0transcription factor TGA2.1
RefseqXP_015647506.10.0transcription factor TGA2.1
SwissprotQ7X9930.0TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBLI1QDE10.0I1QDE1_ORYGL; Uncharacterized protein
STRINGORGLA07G0213300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-116TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  4. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]
  5. Chern M, et al.
    A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.
    PLoS Genet., 2016. 12(5): p. e1006049
    [PMID:27176732]