PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN543111.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 487aa    MW: 53856.9 Da    PI: 7.8695
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN543111.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31326382360
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve +  d+++ ei+Y+geHnh+k
  KN543111.1_FGP001 326 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 382
                        9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540011.77E-3920199No hitNo description
PROSITE profilePS5060013.22828192IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1302.2E-691186No hitNo description
PfamPF029022.9E-599188IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:2.20.25.801.6E-27318383IPR003657WRKY domain
PROSITE profilePS5081123.72319383IPR003657WRKY domain
SuperFamilySSF1182901.7E-24321383IPR003657WRKY domain
SMARTSM007741.7E-34324382IPR003657WRKY domain
PfamPF031062.2E-24326381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0019784Molecular FunctionNEDD8-specific protease activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MAMRPRPRHG GGGGEEEEEE QVLSHGDVVL LRCDLTILRG PHFLNDRIIA FYLAHLAADH  60
HDDDLLLLPP SIPYLLSNLP DPASVAAVAE PLRLASRRLV LLPVNDNPNV SHAEGGSHWT  120
LLVLDNSNAV SGPRFVHHDS LPPTNLPAAR RLAAVLRPLL PASAIPLIEG PTPRQTNGYD  180
CGVFVLAVGR AICHWWPTHS DSDSDWLEAV KREPFNSTSL SPFNCIYQSL PATAQDFGTW  240
CDMQSHKKVA AVKPVASRPS SRLRSFSMLQ EDSTAIDSPR LEDSGRHTAY DQKKADTGKG  300
ACWDNLTVSQ SVRKPNVSAK NSLSYDGYSW RKYGQKQVKG SEFPRSYYKC THPTCPVKRK  360
VEMTPDGRIA EIVYNGEHNH PKPHPPRKPS LSTSVETLVA TNDAGLENKF EGCDQAIGSD  420
AVVEALRGGC HCLDGFRNGN EISDGKKRTL LTNLFREKIY QQHENSCPRM PHPRIVPCHC  480
ISRLRSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2bkq_A2e-26221945176SENTRIN-SPECIFIC PROTEASE 8
2bkq_B2e-26221945176SENTRIN-SPECIFIC PROTEASE 8
2bkq_C2e-26221945176SENTRIN-SPECIFIC PROTEASE 8
2bkq_D2e-26221945176SENTRIN-SPECIFIC PROTEASE 8
2bkr_A2e-26221945176SENTRIN-SPECIFIC PROTEASE 8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN543111.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0617990.0AK061799.1 Oryza sativa Japonica Group cDNA clone:001-039-H08, full insert sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAY3418600.0AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds.
GenBankBX0004960.0BX000496.1 Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0005030.0BX000503.2 Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619786.10.0uncharacterized protein LOC4351243
TrEMBLA0A0E0J5R30.0A0A0E0J5R3_ORYNI; Uncharacterized protein
STRINGONIVA12G00200.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.17e-25WRKY DNA-binding protein 3