PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN542961.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 287aa MW: 32524.4 Da PI: 8.6585

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN542961.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.1	2.1e-54	14	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPt+ee++++yL++kv +++ + +i evd+ k+ePwdLp k+ ++ekewyf++++d+ky+tg r+nrat++gyWkatgkdke KN542961.1_FGP001 14 LPPGFRFHPTNEEIITFYLAPKVVDSRGFCVAAIGEVDLKKCEPWDLPgKAKMNGEKEWYFYCQKDRKYPTGMRTNRATEAGYWKATGKDKE 105 79******************99999556588***********544445788******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++ l+g+kktLvfykgrapkg kt+Wvmheyrl KN542961.1_FGP001 106 IFRNHHMLIGMKKTLVFYKGRAPKGDKTNWVMHEYRL 142 *********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-61	10	168	IPR003441	NAC domain
PROSITE profile	PS51005	58.991	14	168	IPR003441	NAC domain
Pfam	PF02365	1.4E-27	15	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MGEQQQQVER QPDLPPGFRF HPTNEEIITF YLAPKVVDSR GFCVAAIGEV DLKKCEPWDL 60 PGKAKMNGEK EWYFYCQKDR KYPTGMRTNR ATEAGYWKAT GKDKEIFRNH HMLIGMKKTL 120 VFYKGRAPKG DKTNWVMHEY RLADASPPPS SAEPPRQDDW AVCRIFHKSS GIKKPVPVPM 180 QMPMQMHAAA NYQQQMAMAS ASIIQVPMQM QMPSMSDQLQ MLDDFSTGSL MAPPPPPPSY 240 STLPGFPLQI NGGAQQFVGN PSMYYQQQQQ QQQMDMAAGG FVQYVCV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	1	174	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	1	174	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	1	174	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	1	174	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	1	174	7	174	NAC domain-containing protein 19
3swm_B	2e-52	1	174	7	174	NAC domain-containing protein 19
3swm_C	2e-52	1	174	7	174	NAC domain-containing protein 19
3swm_D	2e-52	1	174	7	174	NAC domain-containing protein 19
3swp_A	2e-52	1	174	7	174	NAC domain-containing protein 19
3swp_B	2e-52	1	174	7	174	NAC domain-containing protein 19
3swp_C	2e-52	1	174	7	174	NAC domain-containing protein 19
3swp_D	2e-52	1	174	7	174	NAC domain-containing protein 19
4dul_A	2e-52	1	174	4	171	NAC domain-containing protein 19
4dul_B	2e-52	1	174	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN542961.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107407	0.0	AK107407.1 Oryza sativa Japonica Group cDNA clone:002-127-E05, full insert sequence.
GenBank	EU846995	0.0	EU846995.1 Oryza sativa Japonica Group clone KCS259A08 NAC protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629856.1	1e-169	NAC domain-containing protein 79
Swissprot	Q9FK44	2e-77	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0E0C2B4	1e-172	A0A0E0C2B4_9ORYZ; Uncharacterized protein
STRING	ORUFI01G18470.1	1e-168	(Oryza rufipogon)
STRING	ONIVA01G18370.1	1e-168	(Oryza nivara)
STRING	OBART01G16620.1	1e-168	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	5e-78	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]