PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN542820.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 49aa MW: 5537.24 Da PI: 4.3242 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 38.9 | 2.5e-12 | 1 | 42 | 46 | 87 |
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +++lp +++ d++sslvyeA+ r+rdPvy +v+ i+ lq+q KN542820.1_FGP001 1 MRELPVQQQGDTVSSLVYEANDRMRDPVYDCVRAISFLQNQA 42 578999*********************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 4.5E-10 | 2 | 42 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 49 aa Download sequence Send to blast |
MRELPVQQQG DTVSSLVYEA NDRMRDPVYD CVRAISFLQN QAISGPPLQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN542820.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR855110 | 3e-57 | CR855110.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0502B11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963862.1 | 3e-16 | LOB domain-containing protein 12 | ||||
TrEMBL | A0A0D3FVH1 | 7e-21 | A0A0D3FVH1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G11480.1 | 1e-21 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-15 | LBD family protein |