PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542683.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 831aa    MW: 93461.6 Da    PI: 6.2207
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542683.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY52.97.2e-1757112359
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        DgynWr  GqK+v+g  + + YY C++a+C + k v rsa d+++ +++ +g+Hnh+
  KN542683.1_FGP001  57 DGYNWRICGQKVVQGGCHQKFYYECSQANCGAEKSVTRSA-DGQIKKTVCKGSHNHP 112
                        9***************************************.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-1646112IPR003657WRKY domain
SuperFamilySSF1182905.89E-1750113IPR003657WRKY domain
SMARTSM007747.8E-1155113IPR003657WRKY domain
PROSITE profilePS5081114.60757114IPR003657WRKY domain
PfamPF031061.7E-1457112IPR003657WRKY domain
PROSITE profilePS502319.142247314IPR000772Ricin B, lectin domain
SMARTSM006144.1E-16253304IPR003656Zinc finger, BED-type
PROSITE profilePS5080811.409253308IPR003656Zinc finger, BED-type
PfamPF028921.3E-7256300IPR003656Zinc finger, BED-type
SuperFamilySSF576671.67E-7256302No hitNo description
SuperFamilySSF530981.21E-54391821IPR012337Ribonuclease H-like domain
PfamPF143721.2E-20594690IPR025525hAT-like transposase, RNase-H fold
PfamPF056991.4E-21737819IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MENQSGQAQD GMADQRFRSW LTEQSYGSSS NLAVMQMQVL PSHTTSQIID THPPEYDGYN  60
WRICGQKVVQ GGCHQKFYYE CSQANCGAEK SVTRSADGQI KKTVCKGSHN HPLSSERVFG  120
EGSATLDAIP VGEILQAAGV IRPSVAMPMI EEEDELQSGL GDSEEDDANE ARVDGDGAAA  180
DANAIERHGA AQDITAQTAT EVDVTGNDCQ QRKNYCRRHG AAQEITAQTA TEVDVTGNDC  240
QQRKNYCRSE NRRSKSKVWK EFTAVLSGGK IQSAECKHCK KCLSGKSSGG TSHLRRHLKI  300
CPGQCRDTRI QQKWSSSRLD SSDANNWEFD QETSLELLTR ALVSNLCPFS VTTSANFRKF  360
FAGICPTYNI VPQAAIEEKF LSIFQNEKMK LKEEIALKPG GVFLSVTRSA SYEYGTEKTN  420
KALIKAAVQD WNLEKKLLGI ALPTNIGNEV ILDLEETMTA AGQNFLLAKY KLLIVPCMIN  480
ALHGLFGYTL ERYVLEASRE WFEYMTCSAI RLEKYKEILL RLHLSQPSFG SQKWHLTYYL  540
FEAALQFVKE FPNPDAAHLK MFLRKPFPER LEATKNFCDL ARPIYHAIDV LSRQNVAFNS  600
HFHVIWSLGT VLKESSKKLN IKRIIDIDDM LKKFDNLWRK CYVWLSLAVV LDPRFKLRYL  660
EQCFKQAFGT GAKLCILEVR GKIYELFLQY SCNADQQSGE LVNHWNNDLQ MDRDGNDSLH  720
GTDQNDMGQS ALGEFRELTL YLEGGLCPQN EQFDILKWWK DNALTYPTLA RLARDILAIP  780
GSAVSAESAF DETDERVSLF NRKLSPEIVE ALICTQDWIK SSETGDENGG S
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN542683.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054160.0AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23.
GenBankAP0054990.0AP005499.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0412D08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649039.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like
RefseqXP_025883155.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like
TrEMBLQ0J7F50.0Q0J7F5_ORYSJ; Os08g0198000 protein
STRINGOS08T0198100-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-14WRKY DNA-binding protein 58