PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542612.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-X1
Protein Properties Length: 1074aa    MW: 118694 Da    PI: 7.8929
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542612.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.91.6e-06380397118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG+H+C   CH GpCppC
  KN542612.1_FGP001 380 CGIHRCPVDCHDGPCPPC 397
                        ****************** PP
2zf-NF-X116.32.2e-05487506119
           zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                        CG+HkC + CH+G C + C+
  KN542612.1_FGP001 487 CGRHKCPERCHRGSCVEtCR 506
                        ***************99997 PP
3zf-NF-X116.22.2e-05540559120
           zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                        CG+H C + C+eG+C pCp+
  KN542612.1_FGP001 540 CGRHACRRRCCEGDCAPCPE 559
                        ******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF141441.2E-2639120IPR025422Transcription factor TGA like domain
SuperFamilySSF578503.88E-6226284No hitNo description
PROSITE patternPS013590227277IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.096227278IPR001841Zinc finger, RING-type
SMARTSM004380.02327345IPR000967Zinc finger, NF-X1-type
PfamPF014220.054328344IPR000967Zinc finger, NF-X1-type
CDDcd060081.38E-11370418No hitNo description
SMARTSM004380.0011380399IPR000967Zinc finger, NF-X1-type
PfamPF014227.0E-5380397IPR000967Zinc finger, NF-X1-type
CDDcd060084.32E-10423463No hitNo description
SMARTSM004380.082433452IPR000967Zinc finger, NF-X1-type
PfamPF014220.5433451IPR000967Zinc finger, NF-X1-type
CDDcd060081.71E-12477526No hitNo description
SMARTSM004380.035487507IPR000967Zinc finger, NF-X1-type
PfamPF014220.004487506IPR000967Zinc finger, NF-X1-type
CDDcd060082.38E-12530578No hitNo description
SMARTSM004380.087540559IPR000967Zinc finger, NF-X1-type
PfamPF014220.0049540558IPR000967Zinc finger, NF-X1-type
PfamPF014225.3567578IPR000967Zinc finger, NF-X1-type
SMARTSM00438200653697IPR000967Zinc finger, NF-X1-type
PfamPF014220.43653663IPR000967Zinc finger, NF-X1-type
PfamPF121651.1E-459171021IPR021998Alfin
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1074 aa     Download sequence    Send to blast
MPPPSPHPPH RNGNHVPAPS GESFAKFFEC WISEQSRDLA ALRSAASAAT KPPAPPHDAE  60
LHRLVDRVLG HYEHYYRTKS AAASTDVLRM FSPSWTSTTE NLYLWCGGWR PTAALHLLYS  120
KSGAQLETQL PESLATVKMV ELAGGGGMDA EGMEMEMRAK ADGMRRVLEM ADGLRLETMR  180
EETDLTASDP AAASVISSYL SVAGDGADLS KVGIFLSSAA RRRSPPCLIC FDPIRPSDPV  240
WSCSASCFAL LHLHCIQSWA HQSSSAAPSP TWGCPKCRFP YPKSQTPTSY LCFCSKTVDP  300
APDPWILPHS CGDVCGRRLN ADRDSGCEHN CLLLCHPGPC PPCPAIVPNA MCFCGSHRET  360
RRCSHQRYSC SGKCNKRLGC GIHRCPVDCH DGPCPPCAVR GKHQCECGET MEERLCSERV  420
FQCKRECGGM LQCGKHSCER GCHAGKCGGC PLQGRRTCPC GKKDYPSLDC DAEAATCGST  480
CEKVLGCGRH KCPERCHRGS CVETCRLVIT KSCRCGGLKK EVPCYQELTC ERKCQRLRNC  540
GRHACRRRCC EGDCAPCPEV CDKRLRCGNH KCLSPCHRCH GPIAPPNPEF TLKPIKRKKE  600
KHIDSTPGTP CPPCQEVVLV PCFGQHLGQE RAILCSKRRQ FPCQNLCGNP LNCGNHYCTK  660
ACHVLQIPLS QPEGDQSAIL SLASASAFAE PCEECNLPCQ RFLSSVLFAE NYRIVPICAQ  720
KYVTLVNVRC ACNTLKKEWI CQDVLKEYRQ SGRDPKQIPK NQYAVGLLAC GEDCVKKVKA  780
ADSELHLRKI QEIKTPAVEV ENVPKRRKRR NRGQESVESS KFQEIKAVAL KFLLVIFLCI  840
IVVAGLYLLW KGVYRLSDWM NDMEEQRARQ RHLKPGRLYS LTGDHTSAPF AVLSSVAVTT  900
PSDSVLSSVA VTTPSDSDLE KFAALCNPDL DCLCLYGNSD GTWEVAPPPE MVPPELPEPA  960
LGINFSRDTM YRSDWVALLS VFSDSWLLAV AFFHGARLDR DDRERLFNMI NDLPTVYEVV  1020
FGLEQSDEQS GMDNGAKDTP APQFTLHDDA NQLIRGKARQ NMIYAWMPRS GLIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xvl_A9e-29918102227131PHD finger protein ALFIN-LIKE 2
5xvw_A9e-29918102227131PHD finger protein ALFIN-LIKE 2
5xvw_B9e-29918102227131PHD finger protein ALFIN-LIKE 2
5xvw_C9e-29918102227131PHD finger protein ALFIN-LIKE 2
5xvw_E9e-29918102227131PHD finger protein ALFIN-LIKE 2
5y21_A9e-29918102227131PHD finger protein ALFIN-LIKE 2
5y21_B9e-29918102227131PHD finger protein ALFIN-LIKE 2
5y53_A9e-29918102227131PHD finger protein ALFIN-LIKE 2
5y53_B9e-29918102227131PHD finger protein ALFIN-LIKE 2
5y53_C9e-29918102227131PHD finger protein ALFIN-LIKE 2
5y53_E9e-29918102227131PHD finger protein ALFIN-LIKE 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1803809PKRRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN542612.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667650.0AK066765.1 Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643776.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0E0BXF80.0A0A0E0BXF8_9ORYZ; Uncharacterized protein
STRINGOB01G13760.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-131sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors