PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN542606.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 1236aa MW: 135768 Da PI: 9.2262 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.9 | 2.1e-24 | 108 | 152 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+ KN542606.1_FGP001 108 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPMEA 152 69***************************************9987 PP | |||||||
2 | QLQ | 50.5 | 6.5e-18 | 41 | 77 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s +T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k KN542606.1_FGP001 41 SVLTFMQRQELEHQVLIYRYFAAGAPVPVHLVLPIWK 77 5689*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-5 | 41 | 77 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.827 | 42 | 77 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.1E-10 | 43 | 76 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.072 | 108 | 152 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.1E-20 | 109 | 150 | IPR014977 | WRC domain |
PROSITE pattern | PS00028 | 0 | 294 | 316 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF48403 | 3.11E-8 | 641 | 697 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.5E-8 | 642 | 703 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.26E-5 | 643 | 685 | No hit | No description |
PROSITE profile | PS50088 | 10.259 | 644 | 676 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 12.673 | 644 | 685 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd09323 | 2.40E-84 | 986 | 1236 | No hit | No description |
Pfam | PF03595 | 3.1E-35 | 987 | 1224 | IPR004695 | Voltage-dependent anion channel |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055085 | Biological Process | transmembrane transport | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1236 aa Download sequence Send to blast |
MAAPSPLVLG LGLGLGGSGS DSSGSDAEAS AATVREAPPP SVLTFMQRQE LEHQVLIYRY 60 FAAGAPVPVH LVLPIWKSIA AASSFGPQSF PSLTGLGSLC FDYRSSMEPE PGRCRRTDGK 120 KWRCSRDVVP GHKYCERHVH RGRGRSRKPM EASAAVAPTS LLVRRGVFVW LGGGRRAPVL 180 SLQRQISDPT ARAVASGRPK RTRLLTYRTP RHETPETPSA DSSSSSYQMA AASPESRPPR 240 SLFDLPADFF DSSSLLGSHP SLAPSAAEPS ESIRPAAPPP LSQPSEAPGL RWTCNTCASE 300 FESLQEQREH FKSDLHRLNV KLSIAGKTII KEDDLDKADP DSLFDDLEVS SVSGSEDELE 360 NGPASDRGLS AKDKGEFRKK LYFRCHSGDT VSIWRCVLLK EHEEPVFNSK SGQTESHGST 420 PFVQEDEMLN RVKNLTSEPR DASRLRIILL TSGGHFAGCV FDGNSVIAHK TFHRYVVRAK 480 AGKRQSGKDA TGKVAHSAGS SLRRYNEAAL KKEIQELIAS WKSYFDLCVC VFMYAPSKNR 540 QMLFDGDKTQ SVLQACDIRP IPLTVHRPTL KEAKRLYTNL TQLCYEMECL STDEPHVEDV 600 TSFEQSKEAK QKKIMDSEES ISVSSLSLDL PNKHEGTSIH PSNNETTPLH EAAKSGNAQQ 660 TLELLEQGLD PCIKDARGKT PYLLASDKEV RNTFRRFMAL NLDKWDWHAA DVPSALTKEM 720 EESQAAKQAE KDAKKKARAK ELKKLKKARE KEKEKEKEKA QASQSQRTQT NVRGTSAGQM 780 ANATASMPGL KQKHQLPQPT ALSKEEERQR KLAEEREKRA AAAERRFAAL AAQSSSTSGT 840 AAAEHPPQRA AAADDTSCSC CFSSLVGKVP FHSGKSLGVL NHTGALGQAA AGDGAARRGD 900 FSMFRTKSTL SKQNSLLPSR IREPDLELPP HVEGPSVGRQ GGEDPLNKSV PAGRYFAALR 960 GPELDEVRDY EDILLPKDEV WPFLLRFPVG CFGVCLGLGS QAILWGALAA SPAMRFLHVT 1020 QMINVALWLL ALAVLVAVSV TYALKCVFYF EAIRREYFHP VRVNFFFAPS IAAMFLTISL 1080 PRAVAPERLH PAVWCAFVAP LFALELKIYG QWLSGGKRRL CKVANPSSHL SVVGNFVGAI 1140 LAARVGWAEA GKFLWAIGVA HYIVVFVTLY QRLPTNEALP KELHPVYSMF IATPSAASLA 1200 WAAIYGSFDA VARTFFFMAL FLYMSLVVRI NFFRGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5whg_A | 8e-27 | 294 | 583 | 46 | 364 | Protein VMS1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 149 | GRGRSRKPM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN542606.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121410 | 0.0 | AK121410.1 Oryza sativa Japonica Group cDNA clone:J023132O07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636890.1 | 0.0 | ankyrin repeat and zinc finger domain-containing protein 1 | ||||
TrEMBL | A0A0E0KU79 | 0.0 | A0A0E0KU79_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G20140.1 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 5e-34 | growth-regulating factor 3 |