PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542606.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 1236aa    MW: 135768 Da    PI: 9.2262
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542606.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.92.1e-24108152145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+
  KN542606.1_FGP001 108 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPMEA 152
                        69***************************************9987 PP
2QLQ50.56.5e-184177137
                QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       s +T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k
  KN542606.1_FGP001 41 SVLTFMQRQELEHQVLIYRYFAAGAPVPVHLVLPIWK 77
                       5689*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-54177IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.8274277IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.1E-104376IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.072108152IPR014977WRC domain
PfamPF088798.1E-20109150IPR014977WRC domain
PROSITE patternPS000280294316IPR007087Zinc finger, C2H2
SuperFamilySSF484033.11E-8641697IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-8642703IPR020683Ankyrin repeat-containing domain
CDDcd002041.26E-5643685No hitNo description
PROSITE profilePS5008810.259644676IPR002110Ankyrin repeat
PROSITE profilePS5029712.673644685IPR020683Ankyrin repeat-containing domain
CDDcd093232.40E-849861236No hitNo description
PfamPF035953.1E-359871224IPR004695Voltage-dependent anion channel
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055085Biological Processtransmembrane transport
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1236 aa     Download sequence    Send to blast
MAAPSPLVLG LGLGLGGSGS DSSGSDAEAS AATVREAPPP SVLTFMQRQE LEHQVLIYRY  60
FAAGAPVPVH LVLPIWKSIA AASSFGPQSF PSLTGLGSLC FDYRSSMEPE PGRCRRTDGK  120
KWRCSRDVVP GHKYCERHVH RGRGRSRKPM EASAAVAPTS LLVRRGVFVW LGGGRRAPVL  180
SLQRQISDPT ARAVASGRPK RTRLLTYRTP RHETPETPSA DSSSSSYQMA AASPESRPPR  240
SLFDLPADFF DSSSLLGSHP SLAPSAAEPS ESIRPAAPPP LSQPSEAPGL RWTCNTCASE  300
FESLQEQREH FKSDLHRLNV KLSIAGKTII KEDDLDKADP DSLFDDLEVS SVSGSEDELE  360
NGPASDRGLS AKDKGEFRKK LYFRCHSGDT VSIWRCVLLK EHEEPVFNSK SGQTESHGST  420
PFVQEDEMLN RVKNLTSEPR DASRLRIILL TSGGHFAGCV FDGNSVIAHK TFHRYVVRAK  480
AGKRQSGKDA TGKVAHSAGS SLRRYNEAAL KKEIQELIAS WKSYFDLCVC VFMYAPSKNR  540
QMLFDGDKTQ SVLQACDIRP IPLTVHRPTL KEAKRLYTNL TQLCYEMECL STDEPHVEDV  600
TSFEQSKEAK QKKIMDSEES ISVSSLSLDL PNKHEGTSIH PSNNETTPLH EAAKSGNAQQ  660
TLELLEQGLD PCIKDARGKT PYLLASDKEV RNTFRRFMAL NLDKWDWHAA DVPSALTKEM  720
EESQAAKQAE KDAKKKARAK ELKKLKKARE KEKEKEKEKA QASQSQRTQT NVRGTSAGQM  780
ANATASMPGL KQKHQLPQPT ALSKEEERQR KLAEEREKRA AAAERRFAAL AAQSSSTSGT  840
AAAEHPPQRA AAADDTSCSC CFSSLVGKVP FHSGKSLGVL NHTGALGQAA AGDGAARRGD  900
FSMFRTKSTL SKQNSLLPSR IREPDLELPP HVEGPSVGRQ GGEDPLNKSV PAGRYFAALR  960
GPELDEVRDY EDILLPKDEV WPFLLRFPVG CFGVCLGLGS QAILWGALAA SPAMRFLHVT  1020
QMINVALWLL ALAVLVAVSV TYALKCVFYF EAIRREYFHP VRVNFFFAPS IAAMFLTISL  1080
PRAVAPERLH PAVWCAFVAP LFALELKIYG QWLSGGKRRL CKVANPSSHL SVVGNFVGAI  1140
LAARVGWAEA GKFLWAIGVA HYIVVFVTLY QRLPTNEALP KELHPVYSMF IATPSAASLA  1200
WAAIYGSFDA VARTFFFMAL FLYMSLVVRI NFFRGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5whg_A8e-2729458346364Protein VMS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149GRGRSRKPM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN542606.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1214100.0AK121410.1 Oryza sativa Japonica Group cDNA clone:J023132O07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636890.10.0ankyrin repeat and zinc finger domain-containing protein 1
TrEMBLA0A0E0KU790.0A0A0E0KU79_ORYPU; Uncharacterized protein
STRINGOPUNC04G20140.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.15e-34growth-regulating factor 3