PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN542538.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 181aa MW: 20409.6 Da PI: 10.1863 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 57.8 | 2.2e-18 | 144 | 181 | 1 | 37 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 ++Dgy+WrKYGqK+ k++++pr+Y+rC++a Cpvkkk KN542538.1_FGP001 144 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKK 181 58***************************99******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.0E-18 | 137 | 181 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.121 | 139 | 181 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.29E-15 | 140 | 181 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-8 | 144 | 181 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-14 | 145 | 181 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MAKMLPPPSR SVSSRPPSWL YIPPPRRHGT FTSSCAFRLS PSSPSSPPPP VLDFQYIRFM 60 DSWIEQTSLS LDLNVGLPST ARRSSAPAAP IKVLVEENFL SVKKDHEVEA LEAELRRASE 120 ENKKLTEMLR AVVAKYTELQ GQVVKDGYQW RKYGQKVTKD NPCPRAYFRC SFAPACPVKK 180 K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN542538.1_FGP001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106282 | 1e-178 | AK106282.1 Oryza sativa Japonica Group cDNA clone:002-101-A04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641578.1 | 4e-80 | WRKY transcription factor WRKY28-like | ||||
Swissprot | Q0DAJ3 | 2e-83 | WRK28_ORYSJ; WRKY transcription factor WRKY28 | ||||
TrEMBL | A0A0D3GJA7 | 2e-84 | A0A0D3GJA7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0ACL0 | 3e-83 | A0A0E0ACL0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G24120.1 | 5e-84 | (Oryza glumipatula) | ||||
STRING | OBART06G22880.1 | 3e-85 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1822 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.1 | 1e-21 | WRKY DNA-binding protein 18 |