PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN542415.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YC | ||||||||
Protein Properties | Length: 269aa MW: 30204.7 Da PI: 4.4329 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 72.3 | 7.2e-23 | 31 | 127 | 2 | 95 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ++ fw + ie ++ ++h lP+ +k++++ +d m+sa++P++++k celf+ eltlr+w+ a++ +r + +dia+a+t t+ + KN542415.1_FGP001 31 MEEFWRRSqeqIEASAGNHEHILPIDYVKNVIRPKDDAMMLSADTPTFVTKLCELFVQELTLRAWVCANSHNRDIILGTDIAEAITTTESYH 122 7789976523377777778999********************************************************************** PP NF-YC 91 flvdi 95 fl + KN542415.1_FGP001 123 FLGQM 127 *9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.66E-16 | 10 | 124 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-8 | 53 | 115 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.4E-17 | 53 | 125 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MAIPTKEEVE HNEEDNTFSR LQLLAQQRHA MEEFWRRSQE QIEASAGNHE HILPIDYVKN 60 VIRPKDDAMM LSADTPTFVT KLCELFVQEL TLRAWVCANS HNRDIILGTD IAEAITTTES 120 YHFLGQMGTQ HTLSPFAFMM QGESLLNMKR ENPLVNEVMV CTNKMSINNF DGATSIGGGS 180 SSDAAIVAQQ GETTHPFSSQ NACPSLEDNY VVPMPTGHVD SFSPPTNINV KKLHQEEKNI 240 YSQDVAEEDM SNESLEGSQK DEDLFLHEK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN542415.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639189.1 | 3e-96 | uncharacterized protein LOC4338359 | ||||
TrEMBL | A0A0E0DPM9 | 1e-96 | A0A0E0DPM9_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G09100.1 | 2e-97 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13968 | 15 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 5e-18 | nuclear factor Y, subunit C2 |