PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542415.1_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 269aa    MW: 30204.7 Da    PI: 4.4329
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542415.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC72.37.2e-2331127295
              NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                        ++ fw +    ie ++  ++h lP+  +k++++  +d  m+sa++P++++k celf+ eltlr+w+ a++ +r  +  +dia+a+t t+ + 
  KN542415.1_FGP001  31 MEEFWRRSqeqIEASAGNHEHILPIDYVKNVIRPKDDAMMLSADTPTFVTKLCELFVQELTLRAWVCANSHNRDIILGTDIAEAITTTESYH 122
                        7789976523377777778999********************************************************************** PP

              NF-YC  91 flvdi 95 
                        fl  +
  KN542415.1_FGP001 123 FLGQM 127
                        *9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.66E-1610124IPR009072Histone-fold
PfamPF008081.4E-853115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-1753125IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAIPTKEEVE HNEEDNTFSR LQLLAQQRHA MEEFWRRSQE QIEASAGNHE HILPIDYVKN  60
VIRPKDDAMM LSADTPTFVT KLCELFVQEL TLRAWVCANS HNRDIILGTD IAEAITTTES  120
YHFLGQMGTQ HTLSPFAFMM QGESLLNMKR ENPLVNEVMV CTNKMSINNF DGATSIGGGS  180
SSDAAIVAQQ GETTHPFSSQ NACPSLEDNY VVPMPTGHVD SFSPPTNINV KKLHQEEKNI  240
YSQDVAEEDM SNESLEGSQK DEDLFLHEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN542415.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639189.13e-96uncharacterized protein LOC4338359
TrEMBLA0A0E0DPM91e-96A0A0E0DPM9_9ORYZ; Uncharacterized protein
STRINGOMERI05G09100.12e-97(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139681528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.25e-18nuclear factor Y, subunit C2