PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN542327.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 179aa MW: 19275.9 Da PI: 4.5616 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.9 | 2.7e-09 | 14 | 51 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlk 38 +g+W++eEd +l+ +++q G+g +W + ++++g gR + KN542327.1_FGP001 14 KGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIG-GRVGD 51 79*******************************.99665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.25E-7 | 3 | 53 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 5 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.177 | 9 | 61 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.004 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-8 | 14 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.10E-5 | 16 | 48 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGRAPCCDKA SVKKGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGGRVG DDVDESIRKL 60 LFKLGGNPFA ASPAPPCIPP PPMYEEAPSF VPPLAHGVPL NEGGMQCSSV LPALELDESF 120 HFNHVKLDGL ECLFGMGDHQ NMRWNEVSPL VCPNNAVASS SQGMQQYCLV EEPADLGMQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN542327.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628327.1 | 1e-80 | transcription factor RAX3 | ||||
TrEMBL | A0A0D3FPK8 | 6e-80 | A0A0D3FPK8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GUC1 | 6e-80 | A0A0E0GUC1_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0P1V3 | 6e-80 | A0A0E0P1V3_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XMD4 | 6e-80 | A2XMD4_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1PFX4 | 6e-80 | I1PFX4_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI03G37090.1 | 1e-80 | (Oryza rufipogon) | ||||
STRING | ONIVA03G37150.1 | 1e-80 | (Oryza nivara) | ||||
STRING | ORGLA03G0327000.1 | 1e-80 | (Oryza glaberrima) | ||||
STRING | OBART03G35660.1 | 1e-80 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 7e-26 | myb domain protein 84 |