PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN542312.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 763aa MW: 85962.8 Da PI: 6.0926

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN542312.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.1	2.5e-22	54	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ +++i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+la KN542312.1_FGP001 54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPTHNHQLA 140 7******************9***************99988..9999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-20	54	140	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MDSSRDSEEE RPQRKDNGEE TENGEDGGNA LSLKDVANEL LGCVVHSEEE AYKLYCDYGH 60 RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV 120 DEKGRWTVIR FVPTHNHQLA KPGERHMLRS AKSLAVGKSG VIDPQASTES HPINGFSHMI 180 GSDIVEPPGY TIRDCYNHVS MQGITIIEAG DSQSLVNYFK RRTNEEGPDS ETELEESWAA 240 MLNEYKLQEN NWLSDLYRSR NKWCSAFNKD TFDGGINSSQ WGEVSNNTFT GISDESTPLT 300 RFALLLEKVV KGLRRNESEE DFRCSQTAPV RAIKHSTVLK QAAESYTHKI YKLFEAEFLD 360 GCGATSCHES SCGGNLLRFE ITMQGRGSKE CTEAELAYRN RATQYACSLI AKSHELDESR 420 KIFWDTLETG EKALDVFFEI RSLRSQAAKD VSKRDKKKKK SSKGPSTKKA KPTPATSSAV 480 PELLAQTNVH QFQSAQDAQG NTTIGRPLYY QAFSSAPMQP NQIYMHPNMH TMPLCAPQLI 540 GGTNLCCTSS LTCYITHDFQ ESAKTSFGKC CLDMDAANHL DGFCQPSRRL LHQRERNKKL 600 SRLRSLKGKK RQKFRERFIS GNTKYDDAAR ELLTPKVGYG LAAELRRAGV HVRTVSDKPQ 660 AADHALKRQN GEVDEDMLRN GTHMGFRDEE EDEQDDDEFI VDWDTSDLDG VVDDIVTTRT 720 KFFGATTMSA FADEEIMDGI LGVGINGGDM LWSSDDEDED GYF

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MDSSRDSEEE RPQRKDNGEE TENGEDGGNA LSLKDVANEL LGCVVHSEEE AYKLYCDYGH  60
RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV  120
DEKGRWTVIR FVPTHNHQLA KPGERHMLRS AKSLAVGKSG VIDPQASTES HPINGFSHMI  180
GSDIVEPPGY TIRDCYNHVS MQGITIIEAG DSQSLVNYFK RRTNEEGPDS ETELEESWAA  240
MLNEYKLQEN NWLSDLYRSR NKWCSAFNKD TFDGGINSSQ WGEVSNNTFT GISDESTPLT  300
RFALLLEKVV KGLRRNESEE DFRCSQTAPV RAIKHSTVLK QAAESYTHKI YKLFEAEFLD  360
GCGATSCHES SCGGNLLRFE ITMQGRGSKE CTEAELAYRN RATQYACSLI AKSHELDESR  420
KIFWDTLETG EKALDVFFEI RSLRSQAAKD VSKRDKKKKK SSKGPSTKKA KPTPATSSAV  480
PELLAQTNVH QFQSAQDAQG NTTIGRPLYY QAFSSAPMQP NQIYMHPNMH TMPLCAPQLI  540
GGTNLCCTSS LTCYITHDFQ ESAKTSFGKC CLDMDAANHL DGFCQPSRRL LHQRERNKKL  600
SRLRSLKGKK RQKFRERFIS GNTKYDDAAR ELLTPKVGYG LAAELRRAGV HVRTVSDKPQ  660
AADHALKRQN GEVDEDMLRN GTHMGFRDEE EDEQDDDEFI VDWDTSDLDG VVDDIVTTRT  720
KFFGATTMSA FADEEIMDGI LGVGINGGDM LWSSDDEDED GYF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN542312.1_FGP001

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB023482	0.0	AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBank	AP002536	0.0	AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643627.1	1e-158	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_015643629.1	1e-158	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A0E0HLM6	0.0	A0A0E0HLM6_ORYNI; Uncharacterized protein
STRING	OMERI06G05330.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9806	32	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-24	C2H2-like zinc finger protein