PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542265.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 455aa    MW: 50897.6 Da    PI: 10.4617
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542265.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.97.3e-1083170397
             DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                        fqr ws +De+++L ++   ++++gk       +++  ++++++ k  + + l +K+r + ++  ++ k+         +++hd+  ++ls+
  KN542265.1_FGP001  83 FQRTWSPNDEVLILEAMAAHRQEHGKV--PTAAELFPVLNGRLDRKrLTYKKLADKLRTFMRRHGRDAKN------GPPTQAHDRRLYDLSR 166
                        9************************65..56789999999999865278899********9999998888......556899********** PP

             DUF573  94 kiWg 97 
                         +W 
  KN542265.1_FGP001 167 NVWV 170
                        ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.3E-1383169IPR007592Protein of unknown function DUF573
PfamPF030175.9E-17362416IPR004264Transposase, Tnp1/En/Spm-like
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MAPTLPVVPA HGEDKKKKKK KKKKPLKPSQ EEEEALPLPP PPPDRKRKKA SEPVNSPERA  60
KKKKTATPHE PPSAKQQKRP LPFQRTWSPN DEVLILEAMA AHRQEHGKVP TAAELFPVLN  120
GRLDRKRLTY KKLADKLRTF MRRHGRDAKN GPPTQAHDRR LYDLSRNVWV SQTQPPNLSA  180
NANSNIAGGQ PNQHDAMPTA GKAFDKMRDS YPNLTQALLL LVGTDLEKAL TAIDETKAQA  240
LDLKVSNLKK ELSEAVMESA TIQSTESSKI PCFPSTKLQP EFGAEIEKNF QLEHLDEMKG  300
TQVKLARMEQ EILELKQNFL AFQSQQMADS KQQHDKSSAK GELRRVTMHG QQEDTNNEGG  360
KEVLLLSTTR PHIPVAKATL QTSSGSKFVG GVPLGSEWYQ VFVNDVLKPE APLLRPPGMK  420
MAEALKSIIA WPCAQIVKKC KHLLRRFNAV TMVTQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11324DKKKKKKKKKKP
21423KKKKKKKKKK
31523KKKKKKKKK
41723KKKKKKK
54448RKRKK
64663RKKASEPVNSPERAKKKK
75763ERAKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN542265.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0723860.0AK072386.1 Oryza sativa Japonica Group cDNA clone:J023081P06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610937.10.0probable transcription factor At2g01370 isoform X5
RefseqXP_025876326.10.0probable transcription factor At2g01370 isoform X4
TrEMBLB8ASP00.0B8ASP0_ORYSI; Uncharacterized protein
STRINGORUFI09G00020.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139691113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-11DNA-binding storekeeper protein-related transcriptional regulator