PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541873.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 367aa    MW: 41125 Da    PI: 4.4125
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541873.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.32e-2666131171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        r+++sL+llt+kf++lle +e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn irwkg
  KN541873.1_FGP001  66 RYDSSLGLLTKKFINLLEGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKTLKNMIRWKG 131
                        6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-2863132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.7E-3466131IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.1E-1666129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023198.3E-2468131IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF164211.2E-23172275IPR032198E2F transcription factor, CC-MB domain
SuperFamilySSF1440741.18E-23172277No hitNo description
CDDcd146603.19E-33172278No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MANAADNEEK NERETVQSEV AKGETVQGPD KECTTGAVKG IKRPRKPKGF KKGDAGPSLF  60
SPNNCRYDSS LGLLTKKFIN LLEGAEDGTL DLNKAAETLE VQKRRIYDIT NVLEGVDLIE  120
KTLKNMIRWK GFDMSKPKER ERQISALKLL ELNSITMTVT VPFYVPSKET MEEIESLYDE  180
ESRLDDEIME AQEKLNALRV DEDRRKLLYV SKEDINAIPR FQGSTLIAVN APRGTYIEVP  240
DPNLDMDIYK DLDNQEKHYQ IVFRSAMGPV DCFLISNHQE TFNADQQMAD NLDAAVTSGS  300
SQAPQQMDYV QASEIGESNG VREHTSEPSK RDDPVPGIVK IVPSDDIAAD YWLSSDADVS  360
MTDTWGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A8e-2265131673PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541873.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066121e-115AL606612.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0021I10, complete sequence.
GenBankAL6066161e-115AL606616.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060M15, complete sequence.
GenBankAP0149601e-115AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633977.10.0transcription factor E2FC
TrEMBLC7J1I30.0C7J1I3_ORYSJ; Os04g0112200 protein
STRINGORUFI04G00690.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.22e-77E2F transcription factor 1