PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541667.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 345aa    MW: 39934.4 Da    PI: 6.8745
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541667.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.5e-27134184151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                        krien++nrqvtfskRr+gilKKA E+ vLCdaev v+ifss gkl +y++
  KN541667.1_FGP001 134 KRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCT 184
                        79***********************************************96 PP
2K-box13.53.1e-062102534794
              K-box  47 slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                        + keL  +e++L+++  + R+k +++++++ ++ ++ e+e+    k+L
  KN541667.1_FGP001 210 KPKELIAIEEALNNGQANLRDKMMDHWRMHKRNEKMLEDEH----KML 253
                        689******************97777777666666666555....444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.469126186IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-39126185IPR002100Transcription factor, MADS-box
CDDcd002652.21E-40127205No hitNo description
SuperFamilySSF554551.22E-30127211IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-27128148IPR002100Transcription factor, MADS-box
PfamPF003195.9E-23135182IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-27148163IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-27163184IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MTFAAPLYFG RRRSEERIGK ETSWPRELYP EHKYPQPYRD NHALCRELET SQMHGFSLAG  60
ATSLPHQHDE LEPLAISVHC EWLYRCLIWL SNEALIVCSL NDIESEVKIC FLVCVLGVEE  120
EEEVDMGRGK IEIKRIENST NRQVTFSKRR AGILKKAREI GVLCDAEVGV VIFSSAGKLS  180
DYCTPKTTLS RILEKYQTNS GKILWDEKHK PKELIAIEEA LNNGQANLRD KMMDHWRMHK  240
RNEKMLEDEH KMLAFRVRLI RNARSDYYFP AQSSNLSEGS FTERSLKAES SLSSSLCFQH  300
QREVELSGGI RELELGYHHD DRDFAASMPF TFRVQPSHPN LQQEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-17126196169Myocyte-specific enhancer factor 2B
1tqe_Q3e-17126196169Myocyte-specific enhancer factor 2B
1tqe_R3e-17126196169Myocyte-specific enhancer factor 2B
1tqe_S3e-17126196169Myocyte-specific enhancer factor 2B
6c9l_A3e-17126196169Myocyte-specific enhancer factor 2B
6c9l_B3e-17126196169Myocyte-specific enhancer factor 2B
6c9l_C3e-17126196169Myocyte-specific enhancer factor 2B
6c9l_D3e-17126196169Myocyte-specific enhancer factor 2B
6c9l_E3e-17126196169Myocyte-specific enhancer factor 2B
6c9l_F3e-17126196169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS16. {ECO:0000269|PubMed:9869408}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541667.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankRICOSMAA1e-166L37527.1 Oryza sativa MADS box protein (MADS4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881489.11e-137MADS-box transcription factor 4 isoform X1
SwissprotQ407031e-112MADS4_ORYSJ; MADS-box transcription factor 4
TrEMBLA0A0E0HEP31e-123A0A0E0HEP3_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PMQ21e-123A0A0E0PMQ2_ORYRU; Uncharacterized protein
STRINGOMERI05G14030.31e-167(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-39MIKC_MADS family protein
Publications ? help Back to Top
  1. Ronai Z, et al.
    Transcription factor binding study by capillary zone electrophoretic mobility shift assay.
    Electrophoresis, 2003. 24(1-2): p. 96-100
    [PMID:12652578]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Kang HG,An G
    Morphological alterations by ectopic expression of the rice OsMADS4 gene in tobacco plants.
    Plant Cell Rep., 2005. 24(2): p. 120-6
    [PMID:15703945]
  4. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  5. Chen C, et al.
    Adapting rice anther culture to gene transformation and RNA interference.
    Sci. China, C, Life Sci., 2006. 49(5): p. 414-28
    [PMID:17172048]
  6. Yoshida H, et al.
    superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice.
    Plant Biotechnol. J., 2007. 5(6): p. 835-46
    [PMID:17764519]
  7. Yao SG,Ohmori S,Kimizu M,Yoshida H
    Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development.
    Plant Cell Physiol., 2008. 49(5): p. 853-7
    [PMID:18378529]
  8. Seok HY, et al.
    Rice ternary MADS protein complexes containing class B MADS heterodimer.
    Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
    [PMID:20888318]
  9. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]