PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN541552.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | E2F/DP | ||||||||
Protein Properties | Length: 240aa MW: 27891.2 Da PI: 10.9583 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 50.5 | 3.5e-16 | 68 | 119 | 30 | 71 |
E2F_TDP 30 vakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 va+e+ +e d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g KN541552.1_FGP001 68 VADEIFAElksitqnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 119 5666666677789999999************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 1.9E-10 | 4 | 119 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.0E-22 | 62 | 124 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.02E-11 | 67 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 3.1E-12 | 67 | 119 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14458 | 2.13E-26 | 124 | 226 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.07E-31 | 126 | 229 | No hit | No description |
SMART | SM01138 | 1.3E-24 | 126 | 236 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 5.3E-23 | 127 | 227 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MRQRGRRAVR TGTGRRRRPG RRGSPGGGSF LRKLRPKEEP HIMRYSRTHI MVQTSNDEVY 60 TSSGELIVAD EIFAELKSIT QNGLEFDEKN IRRRVYDAFN VLIAIRVIAK DKKEIKWMGL 120 TNYRYEKIQK LEEVHKELIT RIKNKKKLLQ EIEKQFDDLQ NITLRNQASQ RPAESVNGIL 180 LPFLLIKTSR KARVEIEISE DSKFARFDFN GAPFTMHDDV SILEAIRRNN KGRAGLSILP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN541552.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY224529 | 0.0 | AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631692.1 | 1e-116 | transcription factor-like protein DPB isoform X2 | ||||
TrEMBL | A2WTS2 | 1e-131 | A2WTS2_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA01G0217000.1 | 1e-118 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1283 | 38 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.2 | 4e-40 | Transcription factor DP |