PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN541538.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 26295.9 Da PI: 5.0237 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.8 | 3.6e-10 | 117 | 157 | 5 | 49 |
AP2 5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaa 49 GV+++ grW++ rd + r +lg+f ++eeA++a++a+ KN541538.1_FGP002 117 GVYQRQ-PGRWAVDFRD----SqLKVRQWLGTFPSEEEARAAYDAF 157 9**998.9******888....23459******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.891 | 114 | 180 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-6 | 117 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-9 | 117 | 159 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.9E-4 | 117 | 180 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-11 | 117 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MVAFRRIRIS YSDPDATDSD SDSDSADAGD HDISSRSSRT NAAARRKVIV ISLSRKKGRS 60 LSQSGRHYRR RRSEIPAAAA KAVEAEDWPS LSDGMRRGAV AAARSASAAA KKGSRGGVYQ 120 RQPGRWAVDF RDSQLKVRQW LGTFPSEEEA RAAYDAFEVQ EAPPPSSSAS AATPPPLNPP 180 PFVVDTFLGE DDHLAADEDD RFGFGLADLG HLPLPFLDDN DMDFKLSDSD DLSFLFDIGF 240 M |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 71 | RKKGRSLSQSGRHYRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN541538.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005628 | 0.0 | AP005628.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1014_E02. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025875765.1 | 4e-70 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A0E0QI11 | 4e-92 | A0A0E0QI11_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G13790.1 | 6e-93 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14003 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 6e-07 | related to AP2 11 |