PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN541348.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 260aa MW: 28071.5 Da PI: 9.1906 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 71.1 | 1.6e-22 | 132 | 192 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 Dgy+WrKYGqK+++g+ +prsYYrCt + gC +kk v+r+ + + ++ Y +eH+++ KN541348.1_FGP003 132 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNGGGGAAgYTVAYISEHTCK 192 9************************9888889**********98776537899*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-24 | 115 | 193 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-21 | 123 | 192 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-31 | 130 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.52 | 132 | 173 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-22 | 132 | 192 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEEAYCMMMV GRERELVAEL RHLLFPSPSP TPTTPGSHST TALAGDGECC LPPGLTTTTT 60 VSGGGGRRRG RKRVHRDNDN VKLLLQADDD QEAVVADHGD ANAKPLPNFT KTRRRKQQTT 120 TSTMVTTVPD FDGYQWRKYG QKQIEGAMYP RSYYRCTNST NQGCLAKKTV QRNGGGGAAG 180 YTVAYISEHT CKSIQPSLPP VILDTTVRTT NNHHPPAAAP VVTAVAESAA RARARSPATS 240 SSSDMVMTST SGDTVTYILH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-14 | 132 | 192 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 116 | TRRRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN541348.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123514 | 1e-174 | AC123514.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence. | |||
GenBank | AP014967 | 1e-174 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 1e-174 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616434.1 | 1e-132 | probable WRKY transcription factor 33 | ||||
TrEMBL | A0A0E0IXF3 | 1e-131 | A0A0E0IXF3_ORYNI; Uncharacterized protein | ||||
TrEMBL | Q6IEN0 | 1e-132 | Q6IEN0_ORYSI; WRKY transcription factor 50 (Fragment) | ||||
STRING | ONIVA11G01190.1 | 1e-132 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5760 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 4e-15 | WRKY family protein |