PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541348.1_FGP002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 319aa    MW: 35558.3 Da    PI: 6.3149
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541348.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY55.21.4e-17145199356
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES-- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeH 56 
                        Dg++WrKYGqK+++++++prsYYrCt++   +C+++k v++ + d +     Y+g+H
  KN541348.1_FGP002 145 DGHQWRKYGQKHINNAKHPRSYYRCTYRqgeKCKATKTVQQRE-DLHHA-NSYNGDH 199
                        9**************************99999********987.43332.2344444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-21138213IPR003657WRKY domain
SuperFamilySSF1182901.22E-17139213IPR003657WRKY domain
SMARTSM007741.3E-28143215IPR003657WRKY domain
PROSITE profilePS5081114.309145185IPR003657WRKY domain
PfamPF031062.5E-22145213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKNSSNKRPL VADQWHPSSV CCDHRAALRE IARGQSLVTQ LRAIVLPALH SDERCDLAAQ  60
MMEGILDCSR KAISELQLSS GSPHDDDDHV DDKRRVRKIV SSSSDDDDHC SSKAADDDGN  120
KPLRQHKRRR FGDSVSLETP VPHYDGHQWR KYGQKHINNA KHPRSYYRCT YRQGEKCKAT  180
KTVQQREDLH HANSYNGDHP IMYTVVYYGQ HTCCKGPAAS SDDHVVVEAS QISTDSHCQS  240
PSSSSDLQAA TVHAGDSSQC SNISVTCSSS VVVEDCNKLL DMLPAADELT TDVLLFDMTA  300
YAPLDFDINW EMDTNALWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-131452131068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541348.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981830.0DQ298183.1 Oryza sativa WRKY transcription factor 64 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620021.10.0probable WRKY transcription factor 70
TrEMBLA0A0D3HQP10.0A0A0D3HQP1_9ORYZ; Uncharacterized protein
TrEMBLI1R3H00.0I1R3H0_ORYGL; Uncharacterized protein
TrEMBLQ20DP70.0Q20DP7_ORYSA; WRKY transcription factor 64
TrEMBLQ2QYJ60.0Q2QYJ6_ORYSJ; Os12g0116700 protein
STRINGOS12T0116700-010.0(Oryza sativa)
STRINGORGLA12G0007600.10.0(Oryza glaberrima)
STRINGOBART12G00850.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-18WRKY DNA-binding protein 70