PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541294.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 765aa    MW: 83700.3 Da    PI: 6.9574
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541294.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-10281314741
                        HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
    Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                         Ed++++d+vk++G+  W+ Ia+ ++ gR +kqc+
  KN541294.1_FGP003 281 MEDDQIIDLVKKYGPTKWSVIAKALP-GRIGKQCR 314
                        6*************************.*******9 PP
2Myb_DNA-binding59.95.7e-19346389146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +++WTteE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
  KN541294.1_FGP003 346 KDAWTTEEEQALINAHRIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 389
                        679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5137510.8526195IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-56395IPR002885Pentatricopeptide repeat
PfamPF015357.1E-56390IPR002885Pentatricopeptide repeat
PROSITE profilePS500903.996240259IPR017877Myb-like domain
SuperFamilySSF466896.27E-17240315IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-8241271IPR009057Homeodomain-like
PROSITE profilePS5129415.117260323IPR017930Myb domain
CDDcd001676.59E-10267315No hitNo description
SMARTSM007170.0036274325IPR001005SANT/Myb domain
PfamPF002497.1E-9282314IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-14282341IPR009057Homeodomain-like
SuperFamilySSF466891.09E-21330401IPR009057Homeodomain-like
PROSITE profilePS5129428.34341395IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-23342394IPR009057Homeodomain-like
SMARTSM007175.3E-18345393IPR001005SANT/Myb domain
PfamPF002498.5E-17346389IPR001005SANT/Myb domain
CDDcd001672.17E-14348391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MWGTTAAAAR RLCEVGDVRS VLAMLACGAK AGDAALDAWQ AVGCRQAIGN DAEGQYSSEI  60
KIITYSLLVD GYGKAGKMSN ALHFFSLMKA ASFQPRRELI QGSEVDYGNE AEGFGSKFRK  120
DDKCQEAEAL LDDMVRAGLQ TSEPICQALL NAKARLREDS IASDKDRQKN AEDKCTQQFL  180
QNKGESRVTD PFQILLQVCG GGGGEDVLVP LDGGHGDGGA GGADKRANKE SKGRLDTRGA  240
ECFPYRTEVQ CLHRWQKVLN PELIKGPWTQ EVCHVADFAL MEDDQIIDLV KKYGPTKWSV  300
IAKALPGRIG KQCRESICYD TIHYMELSMK SYNLRWHNHL NPEIRKDAWT TEEEQALINA  360
HRIYGNKWAE IAKVLPGRTD NSIKNHWNSS LRKKQDMYNT SNNMVVPKLL VHDKFKDKPK  420
LMAMEGHLDL NKAPIINSKD QPGTAHRSNC SGFLSRSSLP TAQPLTSHEA SVVDGSAVTL  480
VAQALESDSV RGKGLEIDSV HEKGLEVNSA PDHTGNSWTI QLEAAPSKGE AELSLKNEAR  540
SLGPLCYQIP NMEDVVPVSS SLFSDHLTGN HTSEHCGDEI LSPAGCTTPP PTKGKLTSQP  600
SVDSILKSAA NSFPGTPSIL KRRKRDKSTP VSASEMKISG SNTDRFYTPM GMEPATATPE  660
SFKTTSFLSL GSLDGSVKSF DVSPQYRARS KRMALTKTVE KQLDFSSDRL DTCGSEILNS  720
PCNNSQSTLS ITEAPKLKEK EHGEHAVQLE NLTKNFAHTT NLDVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-5624039433158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-5624039433158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1621626RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541294.1_FGP003
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402120.0FJ940212.1 Oryza sativa Japonica Group clone KCS635B12 Myb-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616493.10.0transcription factor MYB3R-2
RefseqXP_015616500.10.0transcription factor MYB3R-2
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0D9YH510.0A0A0D9YH51_9ORYZ; Uncharacterized protein
STRINGOGLUM01G40780.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-73myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]