PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541271.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 496aa    MW: 53329.9 Da    PI: 8.7733
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541271.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26065.71.1e-20652147
             DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47
                       +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGasnv+k+l+
  KN541271.1_FGP001  6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGASNVSKMLQ 52
                       7********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.9545110IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-196106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010090Biological Processtrichome morphogenesis
GO:0030307Biological Processpositive regulation of cell growth
GO:0042023Biological ProcessDNA endoreduplication
GO:0048364Biological Processroot development
GO:0048367Biological Processshoot system development
GO:0051276Biological Processchromosome organization
GO:0005634Cellular Componentnucleus
GO:0009330Cellular ComponentDNA topoisomerase complex (ATP-hydrolyzing)
GO:0003690Molecular Functiondouble-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MCSGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGASNVSKM LQPPGAAGAT  60
ARRRGEQPGV RGERPDAGPS LRLRRAGAIS FLQNQVSQLQ MQLAVAQGVR TTQRKILGYA  120
TGCHLPSPPV PRSAGPCSGF PSIVGSEGVL REGGAGMGEE EDPDWLRAFQ PPTTSTVMLS  180
SDSYDSPENS PTRTTPSGEE QKGENKASSD HVGDGDVAAP NKGKKATPTR RKTLTSQEDA  240
FGKDEKPTME SNQDKPAKRS TPKKLVKLPS SSNASKVTGP KAGPDQIDDT LEHQEEGVAE  300
EDMQDKLTEH SVSQRLPLII PDKVQRSKAL IECDGDSIDL SGDVGAVGRI VISNSPNGNQ  360
DLLLDLKGTI YKSTIVPSRT FCVVSVGQPE AKIESIMNDF IQLEPQSNLF EAETMMEGTL  420
DGFTFDSDEE GDKLPEPHAS QNDQNNEDGD QPKAKTKRKA EKPAGKGQKK AKVAGKATKK  480
GTRKTQTTKR TKKAKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-1931228117LOB family transfactor Ramosa2.1
5ly0_B1e-1931228117LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541271.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0593400.0AK059340.1 Oryza sativa Japonica Group cDNA clone:001-026-B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625935.10.0DNA-binding protein BIN4
TrEMBLB8A8S70.0B8A8S7_ORYSI; Uncharacterized protein
STRINGONIVA08G12870.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP638944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.16e-37LBD family protein