PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541245.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 378aa    MW: 41889.5 Da    PI: 6.7486
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541245.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.91.8e-32137193259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK vkg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i Y+g+Hnh+
  KN541245.1_FGP001 137 DDGYNWRKYGQKAVKGGEYPRSYYKCTHLSCPVKKKVERSS-DGQITQILYRGQHNHQ 193
                        8****************************************.***************8 PP
2WRKY37.26e-12303325123
                        ---SS-EEEEEEE--TT-SS-EE CS
               WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                        ldDgy+WrKYGqK+vkg+++pr+
  KN541245.1_FGP001 303 LDDGYRWRKYGQKVVKGNPHPRA 325
                        59********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-29127195IPR003657WRKY domain
PROSITE profilePS5081124.593131195IPR003657WRKY domain
SuperFamilySSF1182903.66E-26131195IPR003657WRKY domain
SMARTSM007744.4E-34136194IPR003657WRKY domain
PfamPF031061.5E-24137193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-13290325IPR003657WRKY domain
SuperFamilySSF1182903.53E-10295325IPR003657WRKY domain
PROSITE profilePS5081115.732298325IPR003657WRKY domain
SMARTSM007741.2E-5303349IPR003657WRKY domain
PfamPF031061.1E-7304325IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAIKLNFDFS ATFLFTYAKY LLLHLPIKIC ECFGLQMLPC FFAQGNFEMS HQQALAQVTA  60
EAVHSPYSMI NQSDFSLPFS STTTSVLASQ HVNSSANVSS PREIPTLPSH TDNSNIESTE  120
VSHGFQTTAL TEDKPADDGY NWRKYGQKAV KGGEYPRSYY KCTHLSCPVK KKVERSSDGQ  180
ITQILYRGQH NHQRPPKRRS KDGGALLNEA DVSPEKEDAS TRSEQGSQDY SGKFKASNDG  240
GPSSSRRGDG GEQISGSSDS NDQDEEEVKV EGGATSDGNA NKRHVPAPAQ RIIVQTTSEV  300
DLLDDGYRWR KYGQKVVKGN PHPRAPCYLG PINYSKMGDP FYATTFHQMS SAMMSHWNVG  360
LVLQVIDVDE TQWHNMAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-181361961475WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198RPPKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541245.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3024360.0AY302436.1 Oryza sativa (indica cultivar-group) WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633315.10.0probable WRKY transcription factor 4 isoform X2
TrEMBLQ0DQV80.0Q0DQV8_ORYSJ; Os03g0444900 protein (Fragment)
STRINGOS03T0444900-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.24e-67WRKY DNA-binding protein 4