PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN541231.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 27071.8 Da PI: 9.7259 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.3 | 7.5e-50 | 10 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF P+deelv++yL++kv +++ ++ evd++++ePw+Lp +k +++ewyfFs rd+kyatg r+nratksgyWkat KN541231.1_FGP001 10 LPPGFRFYPSDEELVCHYLHNKVVNQHrfagvgAAGGGTMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKAT 101 79********************99999766654333347***************87788999****************************** PP NAM 87 gkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd+ +++ + + vg++ktLvfy+grap+g+kt+Wvmhe+r+ KN541231.1_FGP001 102 GKDRVIHNPklhaaaaahrRASIVGMRKTLVFYRGRAPNGVKTNWVMHEFRM 153 *******9877776666555555***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-59 | 7 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.66 | 10 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-28 | 11 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVVNQHRFAG VGAAGGGTMV EVDLHTHEPW 60 ELPDVAKLST NEWYFFSFRD RKYATGLRTN RATKSGYWKA TGKDRVIHNP KLHAAAAAHR 120 RASIVGMRKT LVFYRGRAPN GVKTNWVMHE FRMENPHTPP KEDWVLCRVF YKKKAETETE 180 SSYSMENEQE AVIAMARSAA AIKAGYSGTS YSAVALFGVC ISVDASKTSL TDPQKLTAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-47 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-47 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-47 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-47 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-47 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-47 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-47 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-47 | 1 | 178 | 7 | 173 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN541231.1_FGP001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060976 | 0.0 | AK060976.1 Oryza sativa Japonica Group cDNA clone:006-202-E09, full insert sequence. | |||
GenBank | AK070982 | 0.0 | AK070982.1 Oryza sativa Japonica Group cDNA clone:J023075A01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623778.1 | 1e-139 | protein CUP-SHAPED COTYLEDON 1 | ||||
Swissprot | Q84TE6 | 3e-61 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0E0NML9 | 1e-138 | A0A0E0NML9_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8AEI0 | 1e-138 | B8AEI0_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q6K5X2 | 1e-138 | Q6K5X2_ORYSJ; Os02g0810900 protein | ||||
STRING | ORUFI02G38340.1 | 1e-139 | (Oryza rufipogon) | ||||
STRING | OS02T0810900-01 | 1e-139 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 5e-78 | NAC domain containing protein 74 |