PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541230.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 590aa    MW: 64737.8 Da    PI: 4.6134
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541230.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.1e-10441487551
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                        k+ r+   NReA r++Rq+Kka +++Lee+vk L a N++L k+l+ 
  KN541230.1_FGP003 441 KKDRKPLGNREAVRKYRQKKKAHTAHLEEEVKRLRAINQQLVKRLQG 487
                        89999999**********************************99974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF549289.23E-6102141IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3302.5E-6108141IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549283.36E-21140221IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010215.528141218IPR000504RNA recognition motif domain
SMARTSM003605.4E-18142214IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.2E-20142220IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF000764.1E-16143211IPR000504RNA recognition motif domain
Gene3DG3DSA:1.20.5.1703.6E-13436504No hitNo description
SMARTSM003382.0E-9437504IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.979439486IPR004827Basic-leucine zipper domain
PfamPF077161.3E-12440494IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-7441486No hitNo description
CDDcd146861.40E-12442496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MPRRTDNAAS ANSVEPEKSE ECLEFDDEEE EVEEEEIEYE EIEEEIEEEE EVEEDEDVVE  60
EVEEVDEEED EEEEEESDET EGVSKTKGVH QKDVTEKGKH AELLALPPHG SEVYVGGISS  120
DVSSEDLKRL CEPVGEVVEV KSVYVKNLPK NVTQAQLKRL FEHHGEIEKV VLPPSRGGHD  180
NRYGFVHFKD RSMAMRALQN TERYELDGQV LDCSLAKPPA ADKKDDRVPL PSSNGAPLLP  240
SYPPLGYGIM SVPGAYGAAP ASTAQPMLYA PRAPPGAAMV PMMLPDGRLV YVVQQPGGQL  300
PLASPPPQQA GHRSGSGGRH GGSGGRYGGG GGSSGSSRPE EFVSETRLYM RIYQYFPISQ  360
IAESEDALYR QFTSVSHMEY EISDLSLDDF LLSIRTTCTH THTCNPPGPS ETAHTHTCYH  420
THTRVFSSDD DSCGGDKAKP KKDRKPLGNR EAVRKYRQKK KAHTAHLEEE VKRLRAINQQ  480
LVKRLQGQAA LEAEVARLRT SLVDVRSRIN GALGSYPLQA QCGVDNVLGC DGMAQCFAGK  540
PELGERRSCT PSVVNCHISP DSGQNLVVPH ALSPSDVIGS FMVSSTSKDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323331GGRYGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541230.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694930.0AK069493.1 Oryza sativa Japonica Group cDNA clone:J023024M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619732.11e-117heterogeneous nuclear ribonucleoprotein Q isoform X2
RefseqXP_015619733.11e-117heterogeneous nuclear ribonucleoprotein Q isoform X2
RefseqXP_015619734.11e-117heterogeneous nuclear ribonucleoprotein Q isoform X2
RefseqXP_025877774.11e-117heterogeneous nuclear ribonucleoprotein Q isoform X2
TrEMBLA2ZB890.0A2ZB89_ORYSI; Uncharacterized protein
STRINGOBART12G02110.30.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35040.11e-31bZIP family protein