PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN541188.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 337aa MW: 36465.6 Da PI: 4.5185 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.6 | 3e-13 | 114 | 157 | 1 | 49 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaa 49 ++y+GVr +k +g+W+AeIr + + r +lg+f+ta+ A +a+ + KN541188.1_FGP003 114 TCYRGVRLRK-WGKWAAEIRNpF-----TgHREWLGTFDTADAASAAY-QS 157 68******99.**********55.....45999*******55555555.43 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.2E-8 | 114 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-14 | 115 | 164 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.4E-14 | 115 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.148 | 115 | 174 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.09E-14 | 116 | 147 | No hit | No description |
PRINTS | PR00367 | 4.5E-8 | 116 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-18 | 116 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-8 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MAPSKQQQML LKKVMAKKPK TKRLSGFGLK PSAAFSRPHV PSAAASLQPS RRVRVVFEDP 60 DATDSDSDYD EDAGAASKKR YFELFIGKPA SSTKQASPAS TVAAYANIGK VGSTCYRGVR 120 LRKWGKWAAE IRNPFTGHRE WLGTFDTADA ASAAYQSASR NFAEEKRRRG VASSASPASS 180 ATPTPTASSS SSTSAAPFAH PSPSSVLEAT KPAPKPESPL PEQAATPLLV EATNETAELP 240 DDPEFYKDIL RGLQLPDIDP MDFRAGLDAL DISDVPAYMD GELDVLFTED MLLGDFAEED 300 DLDLDDIGDD FCEDFPEIPS GYDFGRGDMF RQVDFCV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN541188.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119645 | 0.0 | AK119645.1 Oryza sativa Japonica Group cDNA clone:002-130-G05, full insert sequence. | |||
GenBank | AP002526 | 0.0 | AP002526.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504H10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY341828 | 0.0 | AY341828.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP210 mRNA, complete cds. | |||
GenBank | EU837259 | 0.0 | EU837259.1 Oryza sativa Japonica Group clone KCS234C10 AP2 domain containing protein mRNA, complete cds. | |||
GenBank | KC988330 | 0.0 | KC988330.1 Oryza sativa AP2 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616539.1 | 0.0 | ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | A0A0D3EJ88 | 0.0 | A0A0D3EJ88_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0MQZ0 | 0.0 | A0A0E0MQZ0_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1NJY5 | 0.0 | I1NJY5_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q9LGB6 | 0.0 | Q9LGB6_ORYSJ; AP2 domain containing protein | ||||
TrEMBL | R9TI30 | 0.0 | R9TI30_ORYSA; AP2 transcription factor | ||||
STRING | OMERI01G01500.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12930 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.2 | 8e-12 | related to AP2 2 |