PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541023.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 264aa    MW: 29313.6 Da    PI: 4.4245
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541023.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.29.4e-25172223151
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEE CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveit 51 
                        ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++t
  KN541023.1_FGP001 172 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTT 223
                        58***************************99****************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-24167223IPR003657WRKY domain
PROSITE profilePS5081122.71167233IPR003657WRKY domain
SuperFamilySSF1182906.41E-22169224IPR003657WRKY domain
SMARTSM007743.4E-25172226IPR003657WRKY domain
PfamPF031062.6E-21173223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSSKKKRAAA IDLSLEAERR RPEEGGGGSD REASDGAAAA AEEDGDVKQR EGPKEETGGE  60
EEKVVEVVVD QGEDGSNEEI KYRTQQGDMM EEDKQPAAAA NVDDDGGDSD GAGASAEEKH  120
MLSEMQEEME RMKEENRMLR RVVDKTVRDY YELQMKLAAY QQQPAAADEP KMNDGCQWRK  180
YGQKVAKGNP CPRAYYRCTV APGCPVRKQV QRCLEDMSIL VTTVTPVADQ ALSVGFQNNN  240
TELGLITKPH FEILYYIYSL MTIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-171722351476WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541023.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040581e-177AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
GenBankAP0040801e-177AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11.
GenBankAP0149581e-177AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-177CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623937.22e-37probable WRKY transcription factor 47
TrEMBLJ3LHH42e-61J3LHH4_ORYBR; Uncharacterized protein
STRINGOB02G40910.13e-62(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-35WRKY DNA-binding protein 9