PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN541013.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

M-type_MADS

Protein Properties

Length: 255aa MW: 26832.9 Da PI: 4.5595

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN541013.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.6	8.8e-15	13	51	5	43
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +r t++kR++ + KKAeELS+LC+++va++ +++t KN541013.1_FGP003 13 HRQKRAATYAKRKESLRKKAEELSTLCGVRVALVCAGPT 51 567899*****************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.75E-16	1	52	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.993	1	46	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.1E-11	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.87E-21	2	51	No hit	No description
PRINTS	PR00404	6.0E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-14	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-7	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-7	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MARRKIPIGL IAHRQKRAAT YAKRKESLRK KAEELSTLCG VRVALVCAGP TTPAADGINC 60 ADLYGAVPWD DTFQPQVMRT GDHFVPMDGY LWQAPGNGWP DLATGCTNES CSCNAAAAAA 120 AMPAMYPPTL DTVHGSFLAA PAQPIPIAFS TGTDFIDAPN DFLTMGLCGG FTNVGDYSAA 180 QPQSSADGGF QLGDTFAAEP GDTQSQNWGS FINVVSDDSA QCNCNAAIHL DQMNYLFGGT 240 GGGEPSDTQS RHWGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN541013.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003331	0.0	AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A2ZSQ5	1e-145	A2ZSQ5_ORYSJ; Uncharacterized protein
STRING	OGLUM01G15990.1	1e-137	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15069	11	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	2e-09	AGAMOUS-like 82