PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN541013.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 250aa MW: 27173.5 Da PI: 6.3068 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.5 | 9.4e-15 | 16 | 47 | 8 | 39 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevavii 39 +r tf++R+++++K A+ELSvLCda+vav++ KN541013.1_FGP002 16 KRAATFARRKETVMKMAKELSVLCDAQVAVVV 47 6899**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-10 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-17 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.671 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.13E-24 | 3 | 82 | No hit | No description |
Pfam | PF00319 | 5.0E-13 | 14 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MPRAKTPMGL IPFPKKRAAT FARRKETVMK MAKELSVLCD AQVAVVVGDP GGGAAEKAAW 60 ESEEGVLDRY RALPPEVRAK RSLTHREYLR GELRKQRAKL AKVREEGAFK PWDDALDGIA 120 EEETRKLHKY LSDKIEAARA RMEAMGLQLG DVDDNGVNGD DGSGLDLQQH VPPSASDAKE 180 FDTAGADFIN ALNNFLTTGV SDYSAQSSGY GIGNQIDNAK QLLYQMQMQY PVGGTGGADP 240 SDTQSKNRGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN541013.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003331 | 0.0 | AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D3ENE0 | 1e-141 | A0A0D3ENE0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G14250.1 | 1e-142 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4572 | 29 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31640.1 | 6e-09 | AGAMOUS-like 92 |