PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN541005.1_FGP005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 217aa MW: 24348 Da PI: 10.29 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.7 | 1.1e-53 | 22 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelvv+yL++kv++++l++ +i+evd+yk++PwdLp+k+ ++kewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v KN541005.1_FGP005 22 LPPGFRFHPTDEELVVHYLCRKVARQPLPV-PIIAEVDLYKLDPWDLPEKALFGRKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPV 112 79****************************.88***************8877899************************************* PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k + ++vg+kk Lvfy+g+ap+g+ktdW+mheyrl KN541005.1_FGP005 113 APKgSARTVGIKKALVFYSGKAPRGVKTDWIMHEYRL 149 *9866778***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-64 | 18 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.943 | 22 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-28 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MAAAAGAVGG SGRRDAEAEL NLPPGFRFHP TDEELVVHYL CRKVARQPLP VPIIAEVDLY 60 KLDPWDLPEK ALFGRKEWYF FTPRDRKYPN GSRPNRAAGR GYWKATGADK PVAPKGSART 120 VGIKKALVFY SGKAPRGVKT DWIMHEYRLA DADRAPGGKK GSQKLDEWVL CRLYNKKNNW 180 EKHMQMVNPA AAGHDGGYLQ SISSPQMKMW QTILPPF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-95 | 8 | 182 | 1 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN541005.1_FGP005 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB028183 | 0.0 | AB028183.1 Oryza sativa mRNA for OsNAC4 protein, complete cds. | |||
GenBank | AY986504 | 0.0 | AY986504.1 Oryza sativa (japonica cultivar-group) NAC protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623706.1 | 1e-128 | NAC domain-containing protein 68 | ||||
Swissprot | Q52QH4 | 1e-129 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A0D9YGF9 | 1e-127 | A0A0D9YGF9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G39020.1 | 1e-128 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5389 | 37 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63790.1 | 2e-88 | NAC domain containing protein 102 |