PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540988.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 252aa    MW: 26970.5 Da    PI: 4.4451
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540988.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.6e-145696146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                       +g+WTt Ed  lv+ v+q+G g+W++    ++ gRt++++k++w++
  KN540988.1_FGP003 56 KGPWTTAEDAVLVKHVRQHGEGNWNA----LP-GRTDNEIKNYWNT 96
                       79************************....**.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.47251102IPR017930Myb domain
SuperFamilySSF466892.23E-1254102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-1554101IPR009057Homeodomain-like
SMARTSM007174.9E-955100IPR001005SANT/Myb domain
PfamPF002491.9E-115696IPR001005SANT/Myb domain
CDDcd001677.36E-125896No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEEMIKPAPA PASSEEEKEV VATAATGERR HEEATAGREE QEEEEEEEAA PVVLKKGPWT  60
TAEDAVLVKH VRQHGEGNWN ALPGRTDNEI KNYWNTRTKR RQRAGLPVYP PDVQLHLAFA  120
KRCRYDDFSS PLSSPQQSAG SNVLSMDAAD AARASSSGYT SARPPPLDLA GQLAMGSRPV  180
QLLAATPFSA PSSPWGDGKP EHSSDDQDHS NGADVVLDLP ILTGGGGGSS EQDDWSLDGA  240
ACQWNNISGG IC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540988.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1479621e-175AC147962.1 Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete sequence.
GenBankAP0149591e-175AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629365.12e-85transcription factor MYB65
TrEMBLA0A0E0NXI39e-84A0A0E0NXI3_ORYRU; Uncharacterized protein
STRINGORUFI03G24730.11e-84(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.11e-16myb domain protein 65