PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540923.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 273aa    MW: 29624.9 Da    PI: 6.384
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540923.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.4e-1177133155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++ k++g+++A+++d  s+  g krk  + g++ t+e Aa+a++ a++k++g
  KN540923.1_FGP003  77 SRYHGVTRLKWSGKFEAHLWDnTSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 133
                        79*******************55558777778888.999999**************98 PP
2AP249.31.2e-15178231155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++k +grW A+I    e +    k ++lg+f t+ eAa+a++ a+ +l+g
  KN540923.1_FGP003 178 SSYRGVTRRK-DGRWQARIGRIGEsR--DtKDIYLGTFETEIEAAEAYDLAAIELRG 231
                        67*****999.9******99953323..36**********99*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-1177144IPR016177DNA-binding domain
PfamPF008473.4E-877133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1078144IPR001471AP2/ERF domain
SMARTSM003802.3E-1378149IPR001471AP2/ERF domain
PROSITE profilePS5103215.75178143IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-17178241IPR016177DNA-binding domain
CDDcd000188.52E-20178241No hitNo description
PfamPF008472.3E-11178231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-18179239IPR001471AP2/ERF domain
SMARTSM003801.6E-25179245IPR001471AP2/ERF domain
PROSITE profilePS5103218.505179239IPR001471AP2/ERF domain
PRINTSPR003678.4E-8180191IPR001471AP2/ERF domain
PRINTSPR003678.4E-8221241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MATVQPAASD PAPPPPPEEE EQPAAAGGEE IAALDEQLAV ADGGGEDGKA AAAAEGGGGG  60
GKLVAETMRK YAAPRSSRYH GVTRLKWSGK FEAHLWDNTS QVEGRKRKGK HGSYVTEENA  120
ARAHDLAALK YWGAGPNTKL NFNVSDYEKE IERMKTMSQD EFVVYIRRQS SCFSRGTSSY  180
RGVTRRKDGR WQARIGRIGE SRDTKDIYLG TFETEIEAAE AYDLAAIELR GVHAVTNFDI  240
SNYCEDGLKK LEASSEVPKL LEGPSKAAKL AGR
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540923.1_FGP003
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851180.0AY685118.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D9 (AP2D9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650903.11e-154AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z028e-66CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0E0QEW50.0A0A0E0QEW5_ORYRU; Uncharacterized protein
STRINGORUFI08G04760.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-66AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]