PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540903.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1026aa    MW: 114661 Da    PI: 6.6673
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540903.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.42.1e-56211372118
               CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        l+ ++rwl+++ei++iL n++k++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++
  KN540903.1_FGP004  21 LEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENEN 112
                        5679**************************************************************************************** PP

               CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                        fqrr+ywlLee + +ivlvhylevk
  KN540903.1_FGP004 113 FQRRTYWLLEEGFMNIVLVHYLEVK 137
                        **********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.84616142IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-5022136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.5E-5430517IPR013783Immunoglobulin-like fold
PfamPF018331.5E-4431504IPR002909IPT domain
SuperFamilySSF812961.71E-16431517IPR014756Immunoglobulin E-set
SuperFamilySSF484031.71E-16618724IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-17623725IPR020683Ankyrin repeat-containing domain
CDDcd002047.08E-13624722No hitNo description
PROSITE profilePS5029717.263630724IPR020683Ankyrin repeat-containing domain
PfamPF127964.3E-7636725IPR020683Ankyrin repeat-containing domain
SMARTSM002480.055663692IPR002110Ankyrin repeat
PROSITE profilePS500889.618663695IPR002110Ankyrin repeat
SMARTSM00248670702731IPR002110Ankyrin repeat
SMARTSM000150.36836858IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.773837866IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055838857IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.3E-7838887IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.0096859881IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.67860884IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-4862881IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1026 aa     Download sequence    Send to blast
MAEVRKYGLP NQPPDIPQIL LEAQNRWLRP TEICHILSNY KKFSIAPEPP NRPASGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEVKGKN NFSRVASKVS AVLKKLKRVQ DYLMLIVLHA QTLSLVRASV  180
SKEKFGATDN CRASSRYHPF VEMQQPVDGV MMNNMLGVSA PSAGYHGEMQ TTTANSDNHF  240
ATHYDIAGVF NEAGAGLRGV SKTLHDSVRF AEPYPEYSAE FMEPALYSSN ATMGSNNLDD  300
NSRLETFMSE ALYTNNLTQK EADALSAAGI MSSQAENNSY TDGIRYPLLK QSSLDLFKIE  360
PDGLKKFDSF SRWMSSELPE VADLDIKSSS DAFWSSTETV NVADGTSIPI NEQLDAFAVS  420
PSLSQDQLFS IIDVSPSYAC TGSRNKVLIT GTFLANKEHV ENCKWSCMFG DVEVPAEVLA  480
HGSLRCYTPV HLSGRVPFYV TCSNRVACSE VREFEFRDSD ARQMDTSDPQ TTGINEMHLH  540
IRLEKLLSLG PDDYEKYVMS DGKEKSEIIN TISSLMLDDK CLNQAVPLDE KEVSTARDQS  600
IEKLVKEKLY CWLVHKVHDE DKGPNVLGKE GQGVIHLVAA LGYDWAVRPI ITAGVKVNFR  660
DARGWTALHW AASCGRERTV GALIANGAES GLLTDPTPQF PAGRTAADLA SENGHKGIAG  720
FLAESALTSH LSALTLKESK DGNVKEICGL GGAEDFAESS SAQLAYRDSQ AESLKDSLSA  780
VRKSTQAAAR IFQAFRVESF HRKKVVEYGD DDCGLSDERT LSLVSIKNAK PGQNDGAHSA  840
AVRIQNKFRG WKGRKEFMII RQKIVKIQAH VRGHQVRKSY RKIVWSVGIV EKIILRWRRK  900
RRGLRGFQPV KQLEGPSPIQ QLEGPSQIQP AKEEEEDEYD YLKDGRKQAE GRLQRALARV  960
KSMTQYPEAR EQYSRIANRV TELQEPQAMM IQDDMQSDGA IADGGDFMAE LEELCGDEDA  1020
PMPTIL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540903.1_FGP004
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084610.0AK108461.1 Oryza sativa Japonica Group cDNA clone:002-143-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLQ7XI440.0Q7XI44_ORYSJ; Putative anther ethylene-upregulated protein ER1
STRINGORGLA07G0175700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.30.0ethylene induced calmodulin binding protein