PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540890.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 166aa MW: 18786 Da PI: 6.7753 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 58.5 | 1.3e-18 | 63 | 107 | 2 | 43 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae 43 Dg+ WrKYG K++k+s fpr YYrC+++ +C+++k v+++++ KN540890.1_FGP002 63 TDGHLWRKYGEKKIKNSSFPRLYYRCSYRddrNCMATKVVQQEND 107 7***************************99999*******99873 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 5.89E-18 | 58 | 108 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-17 | 61 | 110 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-22 | 62 | 115 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.102 | 63 | 106 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-19 | 64 | 114 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MASRHQLQTM QFADPASRSP RPVGGGVHGQ PLPTPLSSPF SSRKPRMQEG HPTCVNLTPI 60 PHTDGHLWRK YGEKKIKNSS FPRLYYRCSY RDDRNCMATK VVQQENDADP PLYRMRSSAP 120 PTPSSSTVVD DGWDTFSSFD LDTCEFSVDD ELLCGDHMYF PDSMQQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540890.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC099774 | 2e-76 | AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 2e-76 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 2e-76 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613415.2 | 9e-77 | probable WRKY transcription factor 32 | ||||
TrEMBL | Q6IER3 | 6e-76 | Q6IER3_ORYSJ; WRKY transcription factor 18 | ||||
STRING | ORGLA10G0049300.1 | 6e-76 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16993 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80590.1 | 2e-15 | WRKY DNA-binding protein 66 |