PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540864.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 211aa MW: 23698.9 Da PI: 5.9324 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.6e-08 | 2 | 28 | 19 | 47 |
TTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqky 47 +G + Wk+I +++g ++t q++s+ qky KN540864.1_FGP002 2 YGRD-WKKIEEHVG-TKTTIQIRSHAQKY 28 7766.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.812 | 1 | 33 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.8E-6 | 2 | 28 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.58E-8 | 2 | 34 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.5E-8 | 2 | 31 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 0.00124 | 2 | 29 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MYGRDWKKIE EHVGTKTTIQ IRSHAQKYFL KVQKMGLAAG LPPQYPRRRL VMQQQQQSSP 60 ANLEWTSTSG TAAWGNHHGL IGPAAAFDSF PGESSFMGAE SFSNMSMDWT GTTSEMATAS 120 IVQDEMIELP LSPDDLQFAQ VYRFIGDIFD PDSPCPVETH LQKLKSMDDI IVKTILLVLR 180 NLEDNLLSPQ FEPIRRLLST YDPNRGLSGH L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540864.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106969 | 0.0 | AK106969.1 Oryza sativa Japonica Group cDNA clone:002-119-G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646001.1 | 1e-133 | protein REVEILLE 8 | ||||
TrEMBL | A0A0E0FGG7 | 1e-137 | A0A0E0FGG7_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G04110.1 | 1e-138 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 6e-34 | MYB_related family protein |