PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540822.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 190aa    MW: 21173.8 Da    PI: 4.5678
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540822.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.6e-081361632855
                        HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  28 eereeLAkklgLterqVkvWFqNrRake 55 
                        +e++ LA+++gL+++qV++WF N+R ++
  KN540822.1_FGP002 136 AEKAALAESTGLDKKQVTNWFINQRKRH 163
                        78999********************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.6E-18144IPR005540KNOX1
PfamPF037903.1E-20239IPR005540KNOX1
SMARTSM012561.2E-2758109IPR005541KNOX2
PfamPF037914.4E-2262107IPR005541KNOX2
SMARTSM003890.0023121170IPR001356Homeobox domain
SuperFamilySSF466891.03E-9135174IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-14135167IPR009057Homeodomain-like
PfamPF059205.9E-10135162IPR008422Homeobox KN domain
PROSITE profilePS500719.782137166IPR001356Homeobox domain
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
CDDcd000864.81E-6144167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MMKAKIMSHP LYPSLLRAFV DCKKVGAPPE VVGRLSSVAV VTDVVEPESQ YSGDRWHPAQ  60
QPAADPELDQ FMETYCYMLT RYGQELARPI QEAEEFFRGI EEQIDSLALD DDVCYEDEVA  120
GGLPEKSAAF GENEEAEKAA LAESTGLDKK QVTNWFINQR KRHWKPKPAA AMDAGFLQMH  180
PRYGGASSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540822.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6950041e-139HQ695004.1 Oryza sativa fused compound leaf 2 (FCL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879711.16e-76putative homeobox protein knotted-1-like 5
SwissprotQ75LX97e-83KNOS5_ORYSJ; Putative homeobox protein knotted-1-like 5
TrEMBLA0A0D3FMA91e-81A0A0D3FMA9_9ORYZ; Uncharacterized protein
TrEMBLB8AP451e-81B8AP45_ORYSI; Uncharacterized protein
STRINGOMERI03G24750.11e-110(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.17e-28KNOTTED-like from Arabidopsis thaliana