PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540807.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 246aa    MW: 27763.1 Da    PI: 8.1269
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540807.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.89.9e-161955135
               GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk+ +
  KN540807.1_FGP001 19 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKHYE 55
                       6667777777*************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-101367IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-101656No hitNo description
Gene3DG3DSA:3.30.50.101.4E-111853IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.7E-131954IPR000679Zinc finger, GATA-type
CDDcd002021.27E-72953No hitNo description
PROSITE profilePS509669.755124171IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-5141170IPR007527Zinc finger, SWIM-type
SMARTSM005755.1E-6146173IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAVDGFLLLL LLAAASSACL RCGISGNATP HMRRGPDGPR TLCNACGIAY RKHYERAVDE  60
HRYAELQADF QASQSYPRIP PAKMLKQAAH TYTPVVFEIF RKEFELFMDS VLFSCGEAGT  120
TSEYKVAPSE KPKEHFVRFD SSDCSCICTC RKFEFMGIPC CHMLKVLDYR NIKELPQRYL  180
LKRWRRTAKS ANEENQGTLL FLICMRIHFA EAHDAGDLNL KIIPSARCPL HDTGVEAVRT  240
GHAELP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540807.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0738030.0AK073803.1 Oryza sativa Japonica Group cDNA clone:J033068D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647351.11e-137protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLB7EMP81e-135B7EMP8_ORYSJ; Os07g0615900 protein
STRINGOS07T0615900-011e-136(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-21FAR1-related sequence 5