PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN540781.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24038.4 Da PI: 9.1369 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.3 | 7.4e-17 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie k r v fskRr++++ KA ELS LC+a++a +++s+ g+ + + KN540781.1_FGP002 16 KRIEKKDARDVCFSKRRQTLFNKAGELSLLCNANIAAVVISPAGRGFSF 64 79****************************************9986655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.399 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-24 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-22 | 8 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-15 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.7E-19 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-15 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-15 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MVKGKGRAGR KKVEIKRIEK KDARDVCFSK RRQTLFNKAG ELSLLCNANI AAVVISPAGR 60 GFSFAHPSVD DVADRLASMA MGIPNNHSLG GGYHDSGGVT NIVQQQKIEY VELQKSLEKS 120 EKKKRVQEAM EKERAGHLMQ SLTSEVNLLG QDELEELHNK LSALPYTSIA KFYQVLQDAK 180 GTRMPLPQPH IEIACQSQFL FEEQAVTPAN ADFPGSST |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN540781.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC098572 | 0.0 | AC098572.2 Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1234_D05, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638580.1 | 1e-160 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A0E0PKD4 | 1e-159 | A0A0E0PKD4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Y2Y5 | 1e-159 | A2Y2Y5_ORYSI; Uncharacterized protein | ||||
TrEMBL | B9FK57 | 1e-159 | B9FK57_ORYSJ; Os05g0303400 protein | ||||
STRING | ORUFI05G11630.1 | 1e-160 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15743 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-15 | AGAMOUS-like 61 |