PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540753.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 265aa    MW: 29759.3 Da    PI: 7.3389
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540753.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY781.1e-2452112258
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 
                        +Dgy+WrKYGqK+++g+ fpr YYrCt++   gCp+ k+ve+  +edp ++ ++Y++eH++
  KN540753.1_FGP001  52 HDGYQWRKYGQKMIRGNSFPRCYYRCTYHqdhGCPASKHVEQHnSEDPPLFRVIYTNEHTC 112
                        7***************************98999*******9852689************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-2542113IPR003657WRKY domain
SuperFamilySSF1182904.71E-2345114IPR003657WRKY domain
SMARTSM007741.9E-3651114IPR003657WRKY domain
PROSITE profilePS5081120.31253115IPR003657WRKY domain
PfamPF031067.0E-2553112IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVKRSDDMDS SSGCSRGAHK RLLQDSRSYD QENAMKKVCI GTRTEYTYAP YHDGYQWRKY  60
GQKMIRGNSF PRCYYRCTYH QDHGCPASKH VEQHNSEDPP LFRVIYTNEH TCGTSNSASD  120
YMASSMQIQQ IADASLRKAQ AAERLRKAEV ETPRLMHSPP PRCRGGYNMA MKEEKDVIVS  180
SLLTVIRGCH IAESAGNNSA AALPANRAPP AVARSDHHSC SYAISPELLP ASDDLTLDFM  240
LDSVLDPHWV EPLDLAWFKE STHTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-12531121068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540753.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033020.0AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642042.10.0probable WRKY transcription factor 64
TrEMBLA0A0D9YGM00.0A0A0D9YGM0_9ORYZ; Uncharacterized protein
STRINGOGLUM01G39350.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.18e-20WRKY DNA-binding protein 55