PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540739.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 599aa    MW: 65457.1 Da    PI: 4.5993
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540739.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.46.7e-223423821050
                        HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                        +vtfskRrng++KKA+ELSvLCd++va+++fs++g+l  +s
  KN540739.1_FGP003 342 KVTFSKRRNGLIKKAYELSVLCDIDVALLMFSPSGRLSHFS 382
                        69***********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF533002.58E-660204IPR002035von Willebrand factor, type A
PfamPF070022.3E-1083121IPR010734Copine
PfamPF070021.2E-42122260IPR010734Copine
Gene3DG3DSA:3.30.40.103.2E-4299340IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM004325.3E-17339384IPR002100Transcription factor, MADS-box
PfamPF003191.2E-20340381IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-22341412IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.89342385IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-13347362IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-13362383IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MGAFCSKQNP SGQQPHCCNH SSSSNAAPKG NNRFAKFGDD YYTLEQVTDA LAHAGLESSN  60
LIVGIDFTKS NEWTGRVSFN NQSLHALGHI LNPYEQAISI IGQTLSRFDE DNLIPCYGFG  120
DGPTSFAPMI ETAIGIVDSS GGQYHVLLII ADGQVTRSVD TGNGQLSPQE RETIDAIVKA  180
SDYPLSIVLV GVGDGPWDMM RQFDDNIPSR AFDNFQFVNF TEIMSRPVPA SKKEAEFALS  240
ALMEIPEQFK AAINLQLLGK RRGFPHRTVL PPPLRDFQQY YGCSTVKETQ STSYGSLQKK  300
TSAPKQDSDI GDQTCPICWL EAKNLAFGCG HQTCSDCGKD LKVTFSKRRN GLIKKAYELS  360
VLCDIDVALL MFSPSGRLSH FSGRRGVEDV ILRYMNLSEH DRGEAIQNRE EIQQEIYSSQ  420
QQLQITEDRL RMFEPDPAAF GTSGEVDGCE KYLMELLTRV VERKNNLLSS HMAPFDATTA  480
AMQGADGTQM YVSQADGMGT FGGDAAMWGP DGGADPGHPM FSASDPLIYL RDHDVYDANS  540
QHCLGPEDQY LSMEHGMVAA AAQEPVEAST ASCSYVPSDE NSGTPVMAYD SNPPPANIA
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin-protein ligase that mediates the formation of 'Lys-63'-linked ubiquitin chains. Regulates apical dominance by acting on the auxin transport proteins abundance (PubMed:17586653). Mediates ubiquitination and subsequent proteasomal degradation of ERF053 in response to drought stress. Acts as a negative regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:17586653, ECO:0000269|PubMed:22095047}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540739.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661500.0AK066150.1 Oryza sativa Japonica Group cDNA clone:J013058G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651091.10.0E3 ubiquitin-protein ligase RGLG2
RefseqXP_015651092.10.0E3 ubiquitin-protein ligase RGLG2
RefseqXP_015651093.10.0E3 ubiquitin-protein ligase RGLG2
SwissprotQ9LY871e-133RGLG2_ARATH; E3 ubiquitin-protein ligase RGLG2
TrEMBLA0A0E0QKM60.0A0A0E0QKM6_ORYRU; Uncharacterized protein
STRINGOMERI08G14860.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-35AGAMOUS-like 104
Publications ? help Back to Top
  1. Kraft E, et al.
    Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis.
    Plant Physiol., 2005. 139(4): p. 1597-611
    [PMID:16339806]
  2. Li W,Schmidt W
    A lysine-63-linked ubiquitin chain-forming conjugase, UBC13, promotes the developmental responses to iron deficiency in Arabidopsis roots.
    Plant J., 2010. 62(2): p. 330-43
    [PMID:20113438]
  3. Pan IC, et al.
    Post-Transcriptional Coordination of the Arabidopsis Iron Deficiency Response is Partially Dependent on the E3 Ligases RING DOMAIN LIGASE1 (RGLG1) and RING DOMAIN LIGASE2 (RGLG2).
    Mol. Cell Proteomics, 2015. 14(10): p. 2733-52
    [PMID:26253232]
  4. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  5. Wu Q, et al.
    Ubiquitin Ligases RGLG1 and RGLG5 Regulate Abscisic Acid Signaling by Controlling the Turnover of Phosphatase PP2CA.
    Plant Cell, 2016. 28(9): p. 2178-2196
    [PMID:27577789]