PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN540729.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 80aa MW: 8682.17 Da PI: 9.8582 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 45.8 | 1.8e-14 | 2 | 62 | 1 | 56 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered 56 +C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l+a+p ++r++ KN540729.1_FGP002 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPE 62 6*********************9999888899*************************9975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.76 | 1 | 80 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-11 | 2 | 62 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 80 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR 60 PEPNWRSLLS AFVIRSIGIF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN540729.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC135500 | 3e-98 | AC135500.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0034J04 map S1466, complete sequence. | |||
GenBank | AK288002 | 3e-98 | AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence. | |||
GenBank | AP014959 | 3e-98 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 3e-98 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651596.1 | 4e-38 | PREDICTED: LOB domain-containing protein 37-like | ||||
Refseq | XP_015628211.1 | 4e-38 | LOB domain-containing protein 38 | ||||
Refseq | XP_020177395.1 | 5e-38 | LOB domain-containing protein 39-like | ||||
Swissprot | Q9FN11 | 4e-24 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A287N9M8 | 4e-37 | A0A287N9M8_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287NA33 | 7e-37 | A0A287NA33_HORVV; Uncharacterized protein | ||||
STRING | Pavir.Ia01299.1.p | 4e-38 | (Panicum virgatum) | ||||
STRING | OGLUM03G26640.1 | 2e-37 | (Oryza glumipatula) | ||||
STRING | MLOC_51325.1 | 2e-37 | (Hordeum vulgare) | ||||
STRING | OS03T0609500-01 | 2e-37 | (Oryza sativa) | ||||
STRING | Traes_4AL_7241716B6.1 | 2e-37 | (Triticum aestivum) | ||||
STRING | Traes_4DS_9575221BB.3 | 2e-37 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8450 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67420.1 | 2e-26 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
---|---|---|---|
|