PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540694.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 154aa MW: 17134.6 Da PI: 9.4252 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 126.9 | 2.3e-39 | 1 | 114 | 30 | 139 |
GRAS 30 laspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDf 117 +asp+g +pm+R+aayfteALa r++r++++++++ pp+e +++ ++ ++al++++ ++Pi++f h+t N+ +l+++eg++rvH+iDf KN540694.1_FGP001 1 MASPAGpTPMHRVAAYFTEALALRVVRMWPHMFDIGPPRELTDDAfggGDDDAMALRILNAITPIPRFLHFTLNERLLREFEGHKRVHVIDF 92 589***9***********************************9989999******************************************* PP GRAS 118 disqGlQWpaLlqaLasRpegp 139 di+qGlQWp Llq+La+R++ KN540694.1_FGP001 93 DIKQGLQWPGLLQSLAARASHR 114 ******************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 7.9E-37 | 1 | 114 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 23.015 | 1 | 154 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MASPAGPTPM HRVAAYFTEA LALRVVRMWP HMFDIGPPRE LTDDAFGGGD DDAMALRILN 60 AITPIPRFLH FTLNERLLRE FEGHKRVHVI DFDIKQGLQW PGLLQSLAAR ASHRSFLVAA 120 HRGEASERDC RKARAASDGI GKGNGDFCVS RFAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-17 | 1 | 110 | 48 | 153 | Protein SCARECROW |
5b3h_A | 2e-17 | 1 | 110 | 47 | 152 | Protein SCARECROW |
5b3h_D | 2e-17 | 1 | 110 | 47 | 152 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540694.1_FGP001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106449 | 0.0 | AK106449.1 Oryza sativa Japonica Group cDNA clone:002-103-E10, full insert sequence. | |||
GenBank | AP001168 | 0.0 | AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02. | |||
GenBank | AP002838 | 0.0 | AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881992.1 | 6e-61 | protein DWARF AND LOW-TILLERING-like | ||||
Swissprot | Q9LWU9 | 6e-62 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A0E0L787 | 4e-66 | A0A0E0L787_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G01470.1 | 7e-67 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 7e-42 | GRAS family protein |
Publications ? help Back to Top | |||
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