PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540691.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 213aa MW: 22566.3 Da PI: 4.6626 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.1 | 8.4e-13 | 16 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv ++++ W++Ia++++ gRt++++k+ w+++l KN540691.1_FGP004 16 KGSWTPEEDMRLVAYIQK-----WSKIASCLP-GRTDNEIKNVWNTHL 57 799*************85.....99*******.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-14 | 5 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.175 | 11 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-19 | 13 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-9 | 15 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-10 | 16 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.89E-12 | 18 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGKGRAPCCA KVGLNKGSWT PEEDMRLVAY IQKWSKIASC LPGRTDNEIK NVWNTHLKKR 60 VSPEQKKGGG KSKRKTTCTD VLVPSPSPSS STTTTTNCSS GDSAGEQSNT SKEEDKIEIP 120 MLELDPCSFD FDMLVDPVVP DTYCPAVSAS ASASAPTSPC SSTSRGVDPL LDLPEIVDLG 180 PELWSIMDGG AGGGLGDIRL PNSTESSSDA TYF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540691.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111960 | 0.0 | AK111960.1 Oryza sativa Japonica Group cDNA clone:001-031-D02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653723.1 | 7e-80 | PREDICTED: myb-related protein Zm1-like | ||||
TrEMBL | A0A0E0KUL3 | 5e-88 | A0A0E0KUL3_ORYPU; Uncharacterized protein | ||||
STRING | OMERI04G18840.1 | 4e-92 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56160.1 | 3e-18 | myb domain protein 72 |