PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540675.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 187aa MW: 20532.5 Da PI: 8.8854 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.5e-18 | 19 | 72 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k KN540675.1_FGP003 19 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 72 4568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.6 | 3e-42 | 18 | 108 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqv++LE++Fe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k+en++L +++++L++e+ KN540675.1_FGP003 18 EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLSHNKKLQAEI 108 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.07E-19 | 11 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.281 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-17 | 17 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.60E-16 | 19 | 75 | No hit | No description |
Pfam | PF00046 | 7.0E-16 | 19 | 72 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-19 | 21 | 82 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.6E-6 | 45 | 54 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.6E-6 | 54 | 70 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.9E-12 | 74 | 108 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MSILLLHLEA PTQGDAGEKK RRLNVEQVRT LEKNFELGNK LEPERKMQLA RALGLQPRQV 60 AIWFQNRRAR WKTKQLEKDY DALKRQLDAV KAENDALLSH NKKLQAEICV IVDACCVNLA 120 MINFPGGFPS SMIGTEIHVG FSVGRKVVGI GAFLTTTNSG AEGEGGGVGA DKPEQGDGGV 180 VQQPQRE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 74 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540675.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC073556 | 1e-141 | AC073556.11 Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence. | |||
GenBank | AC144491 | 1e-141 | AC144491.1 Oryza sativa Japonica Group chromosome 3 clone OSJNAa0091P11, complete sequence. | |||
GenBank | AP014959 | 1e-141 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-141 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629266.1 | 1e-57 | homeobox-leucine zipper protein HOX21 | ||||
Refseq | XP_015689780.1 | 1e-58 | PREDICTED: homeobox-leucine zipper protein HOX21-like | ||||
Swissprot | Q8S7W9 | 1e-58 | HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21 | ||||
TrEMBL | A0A0E0CVU5 | 2e-56 | A0A0E0CVU5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0NQB8 | 3e-56 | A0A0E0NQB8_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A1D6JQ50 | 7e-58 | A0A1D6JQ50_MAIZE; Homeobox-transcription factor 102 | ||||
TrEMBL | F4MFH0 | 3e-56 | F4MFH0_ORYSJ; DNA-binding protein, putative, expressed | ||||
TrEMBL | J3LKG2 | 2e-57 | J3LKG2_ORYBR; Uncharacterized protein | ||||
STRING | OB03G15380.1 | 3e-58 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2289 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-54 | HD-ZIP family protein |