PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540669.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 102aa MW: 11667.4 Da PI: 9.1014 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 62.5 | 1.1e-19 | 56 | 102 | 1 | 47 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll+ KN540669.1_FGP001 56 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQ 102 6******************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.021 | 55 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.8E-19 | 56 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MVYMVYKVER FGRIVSKSCK DLGDPAPAPK ISRTMQAPEE DDDDQQQQQQ HPAARRCAAC 60 RYLRRRCADD CVLAPFFPAS RPHRYACVHR VFGASNVARL LQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-15 | 53 | 102 | 8 | 57 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-15 | 53 | 102 | 8 | 57 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540669.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK112071 | 1e-122 | AK112071.1 Oryza sativa Japonica Group cDNA clone:001-120-E04, full insert sequence. | |||
GenBank | AP004708 | 1e-122 | AP004708.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0700D12. | |||
GenBank | AP004761 | 1e-122 | AP004761.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686C03. | |||
GenBank | AP014964 | 1e-122 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 1e-122 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0CEK8 | 5e-36 | A0A0E0CEK8_9ORYZ; Uncharacterized protein | ||||
STRING | OS08T0517100-01 | 6e-34 | (Oryza sativa) | ||||
STRING | ONIVA08G23410.1 | 3e-33 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-09 | LOB domain-containing protein 24 |