PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540630.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 678aa    MW: 75291.8 Da    PI: 6.5069
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540630.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.69e-48121421128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp+GfrF+Ptdeelv +yLk k++g++++    i++vd+ ++ePwdLp +  +k+++ ew+fF++rd+ky+ g+r+nr+t++gyWkatgkd+
  KN540630.1_FGP001  12 LPVGFRFRPTDEELVRHYLKGKIAGRSHPDLLLIPDVDLSTCEPWDLPaMsVIKSDDPEWFFFAPRDRKYPGGHRSNRSTAAGYWKATGKDR 103
                        79*************************999889***************5347777888********************************** PP

                NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + s+  g l+g+kktLvf++grap+g +t W+mheyr 
  KN540630.1_FGP001 104 LIRSRpAGPLIGIKKTLVFHRGRAPRGLRTAWIMHEYRT 142
                        ****988889***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-555163IPR003441NAC domain
PROSITE profilePS5100555.13812163IPR003441NAC domain
PfamPF023657.5E-2613141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MTPAVAAAAA VLPVGFRFRP TDEELVRHYL KGKIAGRSHP DLLLIPDVDL STCEPWDLPA  60
MSVIKSDDPE WFFFAPRDRK YPGGHRSNRS TAAGYWKATG KDRLIRSRPA GPLIGIKKTL  120
VFHRGRAPRG LRTAWIMHEY RTTEPHFQSG KNGSFVLYRL FNKHEQDDTH TPASNLDQQL  180
HSMSSQGNPQ NGTPAVQPAL ASIMKVHQTL PSSGFSQLTE IQDASSSVHD KEQTVAHDDA  240
FLDVLSQLPD LQPEQRYNGF PNITSPIRPY SDHPFVGNLG EQDLSAHFGS TLSEQDLQSL  300
LFSPNYTKMD KHPTGNIESN PTASSSNPNN NTLLMDSWRK NDLYQMLLIQ RADNTDATCC  360
SSSINAPQTE TSDANLEARG QSSSMVYSGV AEGSPLCNQD QLHSAFNPHM ESQKSGAFCW  420
AGLRTPYPQH WFDTMVEPGR SGMTFSDALK EQGQEQAPSM RHLTAQDLVD PQQGTAARRI  480
RLVCSVERAS VSQPVSSHLQ SEYEAGSCCN TRNSSNNKKE SVRSEDEAGS CCNTGSSSNN  540
HSEENDNAAS QIMVLLQFID GEPMHIQCKE DTPIQVDHSV EVMDKLQGFS FHEEMLVHAN  600
QPRGTNLKQR MLRVESRNSN ENNAPSLETR GQQHAPHIQI WTSSVVRLGW GWQWPALFVM  660
AGSLLLLVGV WKSLNHTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-4361669171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540630.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641780.0AK064178.1 Oryza sativa Japonica Group cDNA clone:002-104-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642953.10.0NAC domain-containing protein 7
TrEMBLA0A0E0PSB20.0A0A0E0PSB2_ORYRU; Uncharacterized protein
STRINGORUFI06G00070.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.34e-65NAC transcription factor-like 9