PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN540627.1_FGP006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 142aa MW: 16003.2 Da PI: 4.3851 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.9 | 1.2e-08 | 10 | 38 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT++Ed++lv+ v+++G ++W+ +a+ KN540627.1_FGP006 10 KGPWTEQEDLQLVCTVRLFGDRRWDFVAK 38 79***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.015 | 5 | 38 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.62E-6 | 6 | 39 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-7 | 6 | 39 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-7 | 10 | 38 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.57E-5 | 12 | 39 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MVTVREEMRK GPWTEQEDLQ LVCTVRLFGD RRWDFVAKVS DTVPIISMDG GDIHDDRSCM 60 ARVLKSTQSV MDGYTMDQIW KEIEAPGAPS LLGIDEGKDK ACSNLPCPLL TSTMSDYSCP 120 EVFWKIDNEE TRMLATQSGY GK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN540627.1_FGP006 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134045 | 1e-173 | AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence. | |||
GenBank | AK111626 | 1e-173 | AK111626.1 Oryza sativa Japonica Group cDNA clone:J013113N19, full insert sequence. | |||
GenBank | AP014967 | 1e-173 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | DQ075258 | 1e-173 | DQ075258.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-1 mRNA, complete cds, alternatively spliced. | |||
GenBank | DQ075259 | 1e-173 | DQ075259.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-2 mRNA, complete cds, alternatively spliced. | |||
GenBank | DQ075260 | 1e-173 | DQ075260.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-3 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617959.1 | 3e-69 | myb-related protein MYBAS1 isoform X2 | ||||
Swissprot | Q53NK6 | 2e-70 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | F4MGF7 | 6e-69 | F4MGF7_ORYSJ; Myb family transcription factor, putative, expressed | ||||
STRING | ORUFI11G25190.1 | 1e-68 | (Oryza rufipogon) | ||||
STRING | OS11T0700500-01 | 1e-68 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 2e-15 | myb domain protein 59 |
Publications ? help Back to Top | |||
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