PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540627.1_FGP006
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 142aa    MW: 16003.2 Da    PI: 4.3851
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540627.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.2e-081038129
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                       +g+WT++Ed++lv+ v+++G ++W+ +a+
  KN540627.1_FGP006 10 KGPWTEQEDLQLVCTVRLFGDRRWDFVAK 38
                       79***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.015538IPR017877Myb-like domain
SuperFamilySSF466892.62E-6639IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-7639IPR009057Homeodomain-like
PfamPF002492.2E-71038IPR001005SANT/Myb domain
CDDcd001671.57E-51239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MVTVREEMRK GPWTEQEDLQ LVCTVRLFGD RRWDFVAKVS DTVPIISMDG GDIHDDRSCM  60
ARVLKSTQSV MDGYTMDQIW KEIEAPGAPS LLGIDEGKDK ACSNLPCPLL TSTMSDYSCP  120
EVFWKIDNEE TRMLATQSGY GK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540627.1_FGP006
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340451e-173AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBankAK1116261e-173AK111626.1 Oryza sativa Japonica Group cDNA clone:J013113N19, full insert sequence.
GenBankAP0149671e-173AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankDQ0752581e-173DQ075258.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-1 mRNA, complete cds, alternatively spliced.
GenBankDQ0752591e-173DQ075259.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-2 mRNA, complete cds, alternatively spliced.
GenBankDQ0752601e-173DQ075260.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-3 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617959.13e-69myb-related protein MYBAS1 isoform X2
SwissprotQ53NK62e-70MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLF4MGF76e-69F4MGF7_ORYSJ; Myb family transcription factor, putative, expressed
STRINGORUFI11G25190.11e-68(Oryza rufipogon)
STRINGOS11T0700500-011e-68(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-15myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]