PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540626.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 282aa    MW: 30780.8 Da    PI: 4.6415
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540626.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573422.5e-13134222295
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                        +f+r+ws eDe+ +L +l   + ++g  +   +da++ ++ +s++ + + +++l  K+  LK++++   kk  +g+    sk hd+  ++ls
  KN540626.1_FGP003 134 AFHRIWSTEDEVRILEALAAHRREHG--SLPQTDALIATLAGSLDNTgYGRKELQGKVSTLKRRYESTAKK--KGDL--PSKGHDRRLYDLS 219
                        699******************99999..678899**********8653899******************99..5554..5799********* PP

             DUF573  93 kki 95 
                        k++
  KN540626.1_FGP003 220 KSV 222
                        986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-19135222IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAPKRPTPPP PPPPPAASSE ETASGSDSDE SEEEEESPLA QPAPVVSNKG AESDSSGEEE  60
SEEEEEEDLV RSSATKSKAP PQENREEDDS SEEEDDESSE SEKAEAPPPP PLNPAPKQGA  120
EGNGPKVSSP KRQAFHRIWS TEDEVRILEA LAAHRREHGS LPQTDALIAT LAGSLDNTGY  180
GRKELQGKVS TLKRRYESTA KKKGDLPSKG HDRRLYDLSK SVKLLEAAHP GLFKRDFGKL  240
DDDKAHALDM KIKKQRIAEI SVVLRRGDLT KEVTKVLTEL VE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540626.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0668230.0AK066823.1 Oryza sativa Japonica Group cDNA clone:J013075K03, full insert sequence.
GenBankAP0040580.0AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627254.11e-108probable tyrosine-protein phosphatase DSP2
TrEMBLA0A0D3FB051e-130A0A0D3FB05_9ORYZ; Uncharacterized protein
STRINGOBART02G34090.11e-131(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-06DNA-binding storekeeper protein-related transcriptional regulator